View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20907_low_2 (Length: 548)
Name: NF20907_low_2
Description: NF20907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20907_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 535
Target Start/End: Complemental strand, 32667252 - 32666736
Alignment:
| Q |
19 |
agaaatccgtcaagtcaacccggtcgtggtctcagctcttgtctccgtcgcactcctaggaaccgccttcggtcagctcctattcggacgcctcggagac |
118 |
Q |
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| T |
32667252 |
agaaatccgtcaagtcaacccggtcgtggtctcagcccttgtctccgttgcactcctaggaaccgccttcggtcagctcctattcggacgcctcggagac |
32667153 |
T |
|
| Q |
119 |
ctaaaaggccggcgccacgtctacggtatcgccttattattgatgctaacaagctctctagcttctggcttctccatctgtacaacaaagagagcttgtg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32667152 |
ctaaaaggccggcgccacgtctacggtatcgccttattattgatgctaacaagctctctagcttctggcttctccatctgtacaacaaagagagcttgtg |
32667053 |
T |
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| Q |
219 |
ttttactatctcttggtttctttagattcttcttagggcttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32667052 |
ttttactatctcttggtttctttagattcttcttagggcttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgctaataaaag |
32666953 |
T |
|
| Q |
319 |
gacaagaggttcttttatagctgcggttttttctatgcaagggtttggtatattggctagtgcaactgttactatggtggtttgcttggtatttcgcagc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32666952 |
gacaagaggttcttttatagctgcggttttttctatgcaagggtttggtatattggctagtgcaactgttactatggtggtttgcttggtatttcgcagc |
32666853 |
T |
|
| Q |
419 |
ggttcgaagccggcaacggcttttgatgtgccgccggaggctgacgttgcatggaggttgatattgatgattggttcagttccagctgcattgacttatt |
518 |
Q |
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| T |
32666852 |
ggttcgaagccggcaacggcttttgatgtgccgccggaggctgacgttgcatggaggttgatattgatgattggttcagttccagctgcattgacttatt |
32666753 |
T |
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| Q |
519 |
attggcgtatgatgatg |
535 |
Q |
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| T |
32666752 |
attggcgtatgatgatg |
32666736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 376
Target Start/End: Complemental strand, 37315913 - 37315765
Alignment:
| Q |
228 |
ctcttggtttctttagattcttcttagggcttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaaggacaagagg |
327 |
Q |
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||||| ||||||||||||||| |||| |||| |||||||||||||| ||| | || |||| ||||||||||| | ||| || |||| ||| | || |
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| T |
37315913 |
ctctttgtttctttagattctggctaggttttggtattggtggtgattaccctctttcagctactattatgtctgaatatgccaacaaaaagactcgtgg |
37315814 |
T |
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| Q |
328 |
ttcttttatagctgcggttttttctatgcaagggtttggtatattggct |
376 |
Q |
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| T |
37315813 |
cgcgtttatagcttcggtttttgctatgcaagggtttggaattttggct |
37315765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 366
Target Start/End: Original strand, 33109294 - 33109402
Alignment:
| Q |
258 |
ttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaaggacaagaggttcttttatagctgcggttttttctatgca |
357 |
Q |
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||||||||||||||||||| ||| | ||| |||| ||||||||||||| ||| || || | ||| |||| ||||||| ||||| || ||| ||||||| |
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| T |
33109294 |
ttggaattggtggtgattaccctctttctgctacaattatgtctgagtatgcgaacaagaagacgcgaggagcttttatcgctgcagtgtttgctatgca |
33109393 |
T |
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| Q |
358 |
agggtttgg |
366 |
Q |
| |
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||| ||||| |
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| T |
33109394 |
aggatttgg |
33109402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 366
Target Start/End: Original strand, 33115329 - 33115437
Alignment:
| Q |
258 |
ttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaaggacaagaggttcttttatagctgcggttttttctatgca |
357 |
Q |
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|||||||||| |||||||| ||| | || |||| || |||||||||| ||||||||||| ||| | ||| | |||||||| || ||||| ||||||| |
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| T |
33115329 |
ttggaattggcggtgattaccctctttcagctactatcatgtctgagtatgcaaataaaaagactcgtggtgcatttatagcggctgttttcgctatgca |
33115428 |
T |
|
| Q |
358 |
agggtttgg |
366 |
Q |
| |
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||| ||||| |
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| T |
33115429 |
aggttttgg |
33115437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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