View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20907_low_4 (Length: 504)
Name: NF20907_low_4
Description: NF20907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20907_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 218 - 485
Target Start/End: Original strand, 52396050 - 52396317
Alignment:
| Q |
218 |
caagattataaatatgtatgcaatgataacatatgaagatacagagaattacgattattaataggattgtgagaannnnnnngacttacataggtgttga |
317 |
Q |
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| T |
52396050 |
caagattataaatatgtatgcaatgataacatatgaagatacagagaattacgattattaataggattgtgagaatttttttgacttacataggtgttga |
52396149 |
T |
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| Q |
318 |
gctggcgaatgaagctagaaaaattattatgcttaaagtacttaggaagaagaattttggagaattcatgagaatcccaaacaacaaaactatcacgaga |
417 |
Q |
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| T |
52396150 |
gctggcgaatgaagctagaaaaattattatgcttaaagtacttaggaagaagaattttggagaattcatgagaatcccaaacaacaaaactatcacgaga |
52396249 |
T |
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| Q |
418 |
agcactccatgaaacaatcgggtcagtttccggatcatccaccatttcaaaagttttcttgagaaacg |
485 |
Q |
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| T |
52396250 |
agcactccatgaaacaatcgggtcagtttccagatcctccaccatttcaaaagtcttcttgagaaacg |
52396317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 52395903 - 52396031
Alignment:
| Q |
13 |
attctaatcgagaacaacaaacatgtcaaaaatcaattcaacatctgtaaaagaggaaccaaacattcatagctccctataaatatgaatcattttatgt |
112 |
Q |
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| T |
52395903 |
attctaatcgagaacaacaaacatgtcaaaaatcaattcaacatctgtaaaagaggaaccagacattcatagctccctataaatatggatcattttatgt |
52396002 |
T |
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| Q |
113 |
taaatcaactttttaacaaaattaatttt |
141 |
Q |
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| T |
52396003 |
taaatcaactttttaacaaaattaatttt |
52396031 |
T |
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