View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20907_low_5 (Length: 502)
Name: NF20907_low_5
Description: NF20907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20907_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 166 - 484
Target Start/End: Original strand, 27841854 - 27842181
Alignment:
| Q |
166 |
tgaagacatttggtacccaagtaacagatcttccaatcaccaatccaagctagtggtgaatgctgctatcatcaacatcataaattcaatctggtttgca |
265 |
Q |
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| T |
27841854 |
tgaagacatttggtacacgagtaacagatattccaatcaccaatccaagctagtggtgaatgctgctatcatcaacatcataaattccatctggtttgca |
27841953 |
T |
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| Q |
266 |
aggaatcaattcagattcaataacaagaaaattcattggaaaagctcc---------attactgcttcattctctttagcaggtaacaattcaaacactt |
356 |
Q |
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| T |
27841954 |
aggaatcaattcagattcaataacaagaaaattcattggaaaagctccattgcctccattactgcttcagtctctttagcaggtaacaattcaaacactt |
27842053 |
T |
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| Q |
357 |
gctccctttccatgacggactttatccttcttaagaagtttgatatcacctttcatcctccaaaagatccaaagatcttagaggtgatatggcaccctct |
456 |
Q |
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| T |
27842054 |
gctccctttccatgacggactttatccttcttaagaagtttgatatcacctttcatcctccaaaagctccaaagatcatagaggtgatatggcaccctct |
27842153 |
T |
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| Q |
457 |
tgttgacccttggatcaaatgcaatacg |
484 |
Q |
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| T |
27842154 |
tgttgacccttggatcaaatgcaatacg |
27842181 |
T |
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Back To:
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 13138059 - 13138137
Alignment:
| Q |
231 |
ctatcatcaacatcataaattcaatctggtttgcaaggaatcaattcagattcaataacaagaaaattcattggaaaag |
309 |
Q |
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| T |
13138059 |
ctatgatcaacatcatcaactcagtttggtttgcaagaaatcaaatgagatttagaaacaagaaaattcattgaaaaag |
13138137 |
T |
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