View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20907_low_8 (Length: 291)
Name: NF20907_low_8
Description: NF20907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20907_low_8 |
 | |
|
| [»] scaffold0182 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 21764408 - 21764138
Alignment:
| Q |
10 |
ctttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttga |
109 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
21764408 |
ctttctccaagagataaagcaaagagcatccatccacgaacaacatccacgacaacttttcttcaaggctatgaaagccttcaagagactttccagttaa |
21764309 |
T |
|
| Q |
110 |
agttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatgtat |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| || |||||||||| |||| || |||||||||||||||| |
|
|
| T |
21764308 |
agttaaaacatcatcgctaaaacgacccttcagttcatcgatgttatcagcaatcttttggtgtagttcctctggattaagtgcggtgttttctatgtat |
21764209 |
T |
|
| Q |
210 |
tctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| || ||| |||||||||||||||||| |
|
|
| T |
21764208 |
tctgctgcccacttaagcttgtacttctctcctaacttcagatctgatctgtcatgatggataggacctat |
21764138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 21714532 - 21714260
Alignment:
| Q |
7 |
tggctttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagt |
106 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | || |
|
|
| T |
21714532 |
tggctctctccaagatatgaagcaaagaacatccatccacgaacaacatccacgatagcttttcttcaaggctaccaaagccttcaagagaccaactggt |
21714433 |
T |
|
| Q |
107 |
tgaagttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatg |
206 |
Q |
| |
|
||||| ||||||||||| | |||| ||||||||||||||| ||||||||| |||||||||||| ||| |||||| || | ||| |||||||||||||| |
|
|
| T |
21714432 |
tgaagctaaaacatcgttgtcaaaatgacccttcagttcatcaatgttatctgcaatctttttgtgtagatcctctggaatgtgtctggtgttttctatg |
21714333 |
T |
|
| Q |
207 |
tattctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggaccta |
279 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
21714332 |
tattttgctgcccacataagtttgtacttctctcctttcttcagatttggattgtcatgatggataggaccta |
21714260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 21788578 - 21788306
Alignment:
| Q |
7 |
tggctttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagt |
106 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||| |
|
|
| T |
21788578 |
tggctttctctaagatatacaacaaagaacatccatccacgaacaacatccacgacagcttttcttcgaggcttccaaagccttcaagagacttgccagt |
21788479 |
T |
|
| Q |
107 |
tgaagttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatg |
206 |
Q |
| |
|
| |||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||| || |||||| || | ||| |||||||| ||| |
|
|
| T |
21788478 |
taaagttaaaacatcgtcgccaaaatgacccttcagttcatcaatgttatctgcaatctttttgtgcagatcctctggaatgtgtccagtgttttcgatg |
21788379 |
T |
|
| Q |
207 |
tattctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggaccta |
279 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
21788378 |
tattttgctgcccacataagcttgtacttctctcctaacttcaaatttgtgttgtcatgatggataggaccta |
21788306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 21704984 - 21704719
Alignment:
| Q |
15 |
tccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttgaagtta |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||| |||||||| |||||| ||||| ||| ||||| |
|
|
| T |
21704984 |
tccaagatatggagcaaagaacatccatccatgaacaatatccacgacagcttttcatcaaggcactcaaagccttgaagagagtttccggttagagtta |
21704885 |
T |
|
| Q |
115 |
aaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatgtattctgc |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| || | || ||||||||||||||||| ||| |
|
|
| T |
21704884 |
aaacatcatcgctaaaacgacccttcagttcatcaatgttatctgcaatctttttgtgtagttcctctggaataagtccggtgttttctatgtattttgc |
21704785 |
T |
|
| Q |
215 |
tgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
21704784 |
tgcccacataagcttgtacttctctcctaacttcagagttggattgtcatgatggataggacctat |
21704719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 21628471 - 21628201
Alignment:
| Q |
10 |
ctttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttga |
109 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| ||| | |
|
|
| T |
21628471 |
ctttctccaagatataaagcaaagagcatccatccacgaacaacatccacgacagcttttcttcaaggcatccaaagccttgaagagagtttcccgttaa |
21628372 |
T |
|
| Q |
110 |
agttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatgtat |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| || | || |||||||||||||| |
|
|
| T |
21628371 |
atttaaaacatcgtcgctaaaacgacccttcagttcatcaatgttatcagcaatctttttgtgtagttcctctggaataagtccaatgttttctatgtat |
21628272 |
T |
|
| Q |
210 |
tctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
| || |||||| | |||||||||||||||||||| |||||||||| | || |||||||||||||||||| |
|
|
| T |
21628271 |
tttgatgcccacacaagcttgtacttctctcctatgttcagatttgtactgccatgatggataggacctat |
21628201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 21623534 - 21623269
Alignment:
| Q |
15 |
tccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttgaagtta |
114 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
21623534 |
tccatgatatgcagcaaagaacatccatccacgaacaacatccacgacagcttttctttaatgctaccaaagccttcaagagactttccggttaaagtta |
21623435 |
T |
|
| Q |
115 |
aaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatgtattctgc |
214 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||| ||| |||||| ||||||| |||| | |||| ||| | | ||||||||| ||||||| ||| |
|
|
| T |
21623434 |
aaacatcgtcactaaaatgacccttcagttcatcaatattatcagcaatcttgttgtgcatatccttctgaacttttctggtgtttttgatgtattttgc |
21623335 |
T |
|
| Q |
215 |
tgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
21623334 |
tgcccacataagcttgtacttctctcctaacttcagatttgtattgccatgatggataggacctat |
21623269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 21726243 - 21725972
Alignment:
| Q |
9 |
gctttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttg |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || |||| |
|
|
| T |
21726243 |
gctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctacgaaagcctgcaagagaccatctggttg |
21726144 |
T |
|
| Q |
109 |
aagttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatgta |
208 |
Q |
| |
|
||| ||||||||||||| |||| ||||||||||||||| |||||||||| |||||||||||| ||| |||||| || | ||| ||||||||||||||| |
|
|
| T |
21726143 |
aagctaaaacatcgtcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtgtccggtgttttctatgta |
21726044 |
T |
|
| Q |
209 |
ttctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
|| ||||||||| ||||| ||||||| |||| |||| ||||||||| || | |||||| ||||||||||| |
|
|
| T |
21726043 |
ttttgctgcccacataagtttgtactactctgctaatatcagatttgtgttctgatgatgaataggacctat |
21725972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 21652418 - 21652145
Alignment:
| Q |
7 |
tggctttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagt |
106 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| ||||| |
|
|
| T |
21652418 |
tggctttctccaagatatgcagcaacgaacatccatccacgaacaacatccacgacaacttttcttcaaggctatcaaagccttcaagagacttgccagt |
21652319 |
T |
|
| Q |
107 |
tgaagttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatg |
206 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||| ||||| ||||| ||||| |||||||||||| | | |||||| || | | ||||||||||| |
|
|
| T |
21652318 |
taaagttaaaacatcgtcgctaaaatgaccctttagttcgttaattttatcggcaatctttttgtgtcgatcctctagaataaagccgttgttttctatg |
21652219 |
T |
|
| Q |
207 |
tattctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
|||| ||||||||| |||||||| |||| ||||||| |||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
21652218 |
tattttgctgcccacataagcttatactcctctcctggtttcatatttgtattgtcatgatggataggacctat |
21652145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 21785755 - 21785482
Alignment:
| Q |
7 |
tggctttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||| || || |
|
|
| T |
21785755 |
tggctttctccaagatatgtagcaaagaacatccatccacaaacaacatccacgacagcttttcttcaaggctaccaaagtcttcaagagactggccggt |
21785656 |
T |
|
| Q |
107 |
tgaagttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatg |
206 |
Q |
| |
|
| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| ||| || | |||| | | || || | | |
|
|
| T |
21785655 |
taaagttaaaacatcatcgctaaaatgacccttcagttcattaatgttatcggcaatctttttgtgtagatcgcgtggattgcggcctatattctcgagg |
21785556 |
T |
|
| Q |
207 |
tattctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
21785555 |
tattttgcggcccacataagcttgtacttctctcctgtcttcagatttggattgtcatgatggataggacctat |
21785482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 280
Target Start/End: Complemental strand, 21682001 - 21681726
Alignment:
| Q |
5 |
catggctttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttcca |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| | ||||| ||||||||| || |
|
|
| T |
21682001 |
catggttttctccaagatatgtagcaaagaacatccatccacgaacaacatccatgataacttttcttcaaggctatgatagccttcaagagactcgccg |
21681902 |
T |
|
| Q |
105 |
gttgaagttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttcta |
204 |
Q |
| |
|
||| ||||||||||||||||||||||| | ||||||| ||||| |||||||||| |||| ||||||||||| |||| |||| | | ||||||| | |
|
|
| T |
21681901 |
gttaaagttaaaacatcgtcgctaaaatggcccttcaattcatcaatgttatcagcaatttttttgtatagatccttttgaatgcttccagtgtttttga |
21681802 |
T |
|
| Q |
205 |
tgtattctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||| |||| || |||| |||||||||||||||||| |
|
|
| T |
21681801 |
tgtattttgctgcccacataagcttgtacttctctcctaactttagatctgtattgccatgatggataggacctat |
21681726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 21772308 - 21772037
Alignment:
| Q |
9 |
gctttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttg |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| || |||| |
|
|
| T |
21772308 |
gctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttg |
21772209 |
T |
|
| Q |
109 |
aagttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatgta |
208 |
Q |
| |
|
||||||||||||| ||| |||| ||||||||||||||| |||||||||| |||||||||||| ||| |||||| || | | | | | ||||||||||| |
|
|
| T |
21772208 |
aagttaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttattttctatgta |
21772109 |
T |
|
| Q |
209 |
ttctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
|| ||||||||| ||||| |||||||||||| |||| ||||||||| || | |||||| ||||||||||| |
|
|
| T |
21772108 |
ttttgctgcccacataagtttgtacttctctgctaatatcagatttgtgttatgatgatgaataggacctat |
21772037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 21807970 - 21808237
Alignment:
| Q |
13 |
tctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttgaagt |
112 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || ||| |||| |
|
|
| T |
21807970 |
tctccaagatataaagcaaagagcatccatccacgaacaacatccatgacagcttttcttcaaggctaccaaagccttcaagagactggccggttaaagt |
21808069 |
T |
|
| Q |
113 |
taaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatgtattct |
212 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||| ||| |||||| || | | ||||||||||||||| |
|
|
| T |
21808070 |
taaaacatcgtcgccaaaatgacccttcagttcatcgatgttatcagcaatctttttgtgtagatcctctagaataaagccgctgttttctatgtatttc |
21808169 |
T |
|
| Q |
213 |
gctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
|| | ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
21808170 |
gcagaccacataagcttgtacttctctcctaacttcagatttatatttccatgatggataggacctat |
21808237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 7 - 260
Target Start/End: Complemental strand, 21992531 - 21992278
Alignment:
| Q |
7 |
tggctttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagt |
106 |
Q |
| |
|
|||||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
21992531 |
tggctttctctaagatatacaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggcttccaaagccttcaagagactttccagc |
21992432 |
T |
|
| Q |
107 |
tgaagttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatg |
206 |
Q |
| |
|
| |||||||||||||||| |||||| ||||||||||||||| ||||||||| | ||||||||||| ||| || | |||| || | ||||| ||| |
|
|
| T |
21992431 |
taaagttaaaacatcgtcactaaaatgacccttcagttcatcaatgttatcgataatctttttgtgtagatcgcatggattaagtcctgcattttcgatg |
21992332 |
T |
|
| Q |
207 |
tattctgctgcccatataagcttgtacttctctcctaacttcagatttgcattg |
260 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21992331 |
tattttgctgcccacgtaagcttgtacttctctcctaacttcagatttgcattg |
21992278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 15713964 - 15713699
Alignment:
| Q |
15 |
tccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttgaagtta |
114 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||| |||||||| ||| |||||| |
|
|
| T |
15713964 |
tccaagatatgcagcaaagagcatccatccacgaacaacatccatgacagcttttcttctaggctaccaaatccttgaagtgactttccggttaaagtta |
15713865 |
T |
|
| Q |
115 |
aaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatgtattctgc |
214 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||| |||||||||| |||||||||||| ||||||||| || | | ||||||| ||||||| ||| |
|
|
| T |
15713864 |
aaacatcgtcactaaaatgacacttcagttcatcaatgttatcagcaatctttttgtgcagttcctctagaatgcttccagtgtttttgatgtattttgc |
15713765 |
T |
|
| Q |
215 |
tgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||| ||||||| ||||| |||||||||||| ||||| |
|
|
| T |
15713764 |
cgcccacataagcttgtacttctcccctgactttagatttgtattgtcatgatggatagggcctat |
15713699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 21647096 - 21646819
Alignment:
| Q |
7 |
tggctttctccaagatatgtagcaaagaacatccat----ccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttc |
102 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||| | |
|
|
| T |
21647096 |
tggctttctctaagatatgcagcaaagaacatccatatatccacgaacaatatccacgacaacttttcttcaaggctacggaagcctttaagagacttgc |
21646997 |
T |
|
| Q |
103 |
cagttgaagttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcc-tcttgattctgtttggtgtttt |
201 |
Q |
| |
|
| || |||||||||| |||||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||| ||| |||| ||||| | ||||||| |
|
|
| T |
21646996 |
cggtcaaagttaaaacgtcgtcgctaaaatgacccttcagttcatcaatgttatctacaatctttttgtgtagatccttcttaattct-tcccgtgtttt |
21646898 |
T |
|
| Q |
202 |
ctatgtattctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||||||||| |||||| |||| ||||| |||||||||||||||||| |
|
|
| T |
21646897 |
tgatgtattttgctgcccacataagcttgtatttctctcctatcttcagctttggattgtcatgatggataggacctat |
21646819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 21745873 - 21745609
Alignment:
| Q |
15 |
tccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttgaagtta |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||| |
|
|
| T |
21745873 |
tccaagatatggagcaaagaacatccatctacgaataacatccacgacagcttttcttcaaggcattcaaagccttgaagagaatttccagttaaagtta |
21745774 |
T |
|
| Q |
115 |
aaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatgtattctgc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || | | |||| || || || || | ||||| ||| |
|
|
| T |
21745773 |
aaacatcgtcgctaaaacgacccttcagttcatcaatgttatcaacaatctttttgtgcagatcgtgtggattgtggcctgtattctcgaggtattttgc |
21745674 |
T |
|
| Q |
215 |
tgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggaccta |
279 |
Q |
| |
|
|||||| |||||||| |||| |||||| ||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
21745673 |
tgcccacataagcttatactcttctcctgtctttagatttggattgtcatgatggataggaccta |
21745609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 21664442 - 21664174
Alignment:
| Q |
15 |
tccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttgaagtta |
114 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| || ||| |||||| |
|
|
| T |
21664442 |
tccaagatataaagcaaagagcatccatccacgaacaatatccacgacagcttttcttcaaggcttccaaagccttcaagagacttgccggttaaagtta |
21664343 |
T |
|
| Q |
115 |
aa---acatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatgtattc |
211 |
Q |
| |
|
|| ||||| ||| |||| ||||||||||||||| |||||||||| ||||||||||| ||| ||| | |||| || | || ||||| ||||||| |
|
|
| T |
21664342 |
aaattacatcatcgtcaaaatgacccttcagttcatcgatgttatcaaaaatctttttgtgtagatcccgtggattgagtcttgtattttcaatgtattt |
21664243 |
T |
|
| Q |
212 |
tgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||| || |||| |||||||||||||||||| |
|
|
| T |
21664242 |
tgctgcccacataagcttgtacttccctcctaacttcagatctgtattgccatgatggataggacctat |
21664174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 21792356 - 21792087
Alignment:
| Q |
11 |
tttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttgaa |
110 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||| | ||| || |
|
|
| T |
21792356 |
tttctccaagatatgcaacaaagaacatccatccacgaacaatatccatgacagcttttcttcgaggctaccaaagccgtcaagagacttgcgggttaaa |
21792257 |
T |
|
| Q |
111 |
gttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctcttgattctgtttggtgttttctatgtatt |
210 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| || ||||||||| |||||||||||| || || | || | || || |||| ||||||| |
|
|
| T |
21792256 |
gttaaaacatcatcgctaaaacgatccttcagcgtatcaatgttatcggcaatctttttgtgcagatctttcagaatgctttcagtttttttgatgtatt |
21792157 |
T |
|
| Q |
211 |
ctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||| || | || ||||||||| |||||||| |
|
|
| T |
21792156 |
ctgctgcccacataagcttgtacttctctcctaactccagatctgtactgccatgatggatgggacctat |
21792087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 278
Target Start/End: Complemental strand, 21689759 - 21689491
Alignment:
| Q |
10 |
ctttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttga |
109 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||| ||| |||||||| | ||||| ||||| || | |
|
|
| T |
21689759 |
ctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttccggtcaa |
21689660 |
T |
|
| Q |
110 |
agttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatag-ttcctcttgattctgtttggtgttttctatgta |
208 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| || ||||||||||||||| ||||||| ||| | ||||| || || | ||||||| ||||| |
|
|
| T |
21689659 |
tgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgct-tccagtgtttttgatgta |
21689561 |
T |
|
| Q |
209 |
ttctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacct |
278 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||| ||| | |||| |||||||||||||||| |
|
|
| T |
21689560 |
ttttgctgcccacataagcttgtacttctctcctaactttagagatttattgccatgatggataggacct |
21689491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 25722 - 25547
Alignment:
| Q |
7 |
tggctttctccaagatatgtagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||| |
|
|
| T |
25722 |
tggcattctccaagatatgtagcaaagaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttttagt |
25623 |
T |
|
| Q |
107 |
tgaagttaaaacatcgtcgctaaaacgacccttcagttcattaatgttatcaacaatctttttgtatagttcctct |
182 |
Q |
| |
|
| ||||||||||||| ||||||||| ||||||||| | ||| |||| ||| |||||||||||||||||| |||| |
|
|
| T |
25622 |
taaagttaaaacatcctcgctaaaatgacccttcaaattattgatgtcttcatcaatctttttgtatagtttctct |
25547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 25471 - 25386
Alignment:
| Q |
195 |
gtgttttctatgtattctgctgcccatataagcttgtacttctctcctaacttcagatttgcattgttatgatggataggacctat |
280 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
25471 |
gtgttttctatgtattctgctgcccacttaagcttgtacttctctcctaacttcagatttttattgtcatgatggataggacctat |
25386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 18192060 - 18192182
Alignment:
| Q |
29 |
caaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctaccaaagcctccaagagactttccagttgaagttaaaacatcgtcgcta |
128 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||||| | | || |||||||| || ||| | || | |||||||||||||||| | |
|
|
| T |
18192060 |
caaagaacatccatccacaaacaacatccatgatagcttttcttccaagttatcaaagccttcacaaga---tacact---agttaaaacatcgtcggca |
18192153 |
T |
|
| Q |
129 |
aaacgacccttcagttcattaatgttatc |
157 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
18192154 |
aaaagacccttcagttcattaatgttatc |
18192182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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