View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20907_low_9 (Length: 288)
Name: NF20907_low_9
Description: NF20907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20907_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 148 - 272
Target Start/End: Original strand, 38622365 - 38622489
Alignment:
| Q |
148 |
aggatcttcatctgatttctcctatttttctcaacgacctttctttcgactttggtagaagaaggttgacattcttgttgatcatggtccattgaaggca |
247 |
Q |
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| T |
38622365 |
aggatcttcatctgatttctcctatttttctcaacgacctttctttcgactttggttgaagaaggttgacattcttgttgatcatggtccattgaaggca |
38622464 |
T |
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| Q |
248 |
accttgaaatttcttacgataaata |
272 |
Q |
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| T |
38622465 |
accttgaaatttcttacgataaata |
38622489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 38622179 - 38622089
Alignment:
| Q |
68 |
cctactactttaacacattgtttttggcagtgagaagttgtcactttaaccgatattcatgatatttctataaattctataggatcttcat |
158 |
Q |
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| T |
38622179 |
cctactattttaacacattgtttttggcagttagaagttgtcactttaactgatattcatgatatttctataaattctataggttcttcat |
38622089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 38580763 - 38580665
Alignment:
| Q |
148 |
aggatcttcatctgatttctcctatttttctcaacgacctttctttcgactttggt---agaagaaggttgacattcttgttgatcatggtccattgaa |
243 |
Q |
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| T |
38580763 |
aggatcttcatttggtttctcctatttttctcaacaatctttctttccactttggttgaagaagaaggttgacctccttgttgattatgatccattgaa |
38580665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 38561547 - 38561449
Alignment:
| Q |
148 |
aggatcttcatctgatttctcctatttttctcaacgacctttctttcgactttggt---agaagaaggttgacattcttgttgatcatggtccattgaa |
243 |
Q |
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| T |
38561547 |
aggatcttcatttggtttctcctatttttctcaacaatctttctttccactttggttgaagaagaaggtcgacctccttgttgattttgatccattgaa |
38561449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 38605968 - 38605870
Alignment:
| Q |
148 |
aggatcttcatctgatttctcctatttttctcaacgacctttctttcgactttggt---agaagaaggttgacattcttgttgatcatggtccattgaa |
243 |
Q |
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| T |
38605968 |
aggatcttcatttggtttctcctatttttctcaacaatctttctttccactttggttgaagaagaaggtcgacctccttgttgattttgatccattgaa |
38605870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38622243 - 38622203
Alignment:
| Q |
1 |
tattgttattatgatgtcaatattgtaacatgtggtataac |
41 |
Q |
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| T |
38622243 |
tattgttattatgatgtaaataatgtaacatgtggaataac |
38622203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 30195234 - 30195179
Alignment:
| Q |
148 |
aggatcttcatctgatttctcctatttttctcaacgacctttctttcgactttggt |
203 |
Q |
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| T |
30195234 |
aggatcttcatctgatttcttctgtttttttcaacgagccttctttcaactttggt |
30195179 |
T |
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