View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20908_high_10 (Length: 333)
Name: NF20908_high_10
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20908_high_10 |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 13052248 - 13051946
Alignment:
| Q |
12 |
atgaaggtaggatccaaaactcagggggcatcgggttgcatccagaccaatcaaatacaccaagtatctacagataaagaataacctttactcattttat |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
13052248 |
atgaaggtaggatccaaaactcagggggcatcgggttgcatccagaccaatcaaatacaccaagtatctacagataaagaatagcttttactcattttat |
13052149 |
T |
|
| Q |
112 |
cgatacaaatttgaagattttctctcatttcttcatggatttcatgtttcatnnnnnnnnttatattagataaaatcctaaccctaaatgtaaaaaatta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
13052148 |
cgatacaaatttgaagattttctctcatttcttcatggatttcatgtttcataaaaaaaattatattagatagaatcctaaccctaaatgtaaaaaatta |
13052049 |
T |
|
| Q |
212 |
taccgaaagccaagtttttccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13052048 |
taccgaaagccaagtttttccccatgaaggtatatgcgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcca |
13051949 |
T |
|
| Q |
312 |
tcc |
314 |
Q |
| |
|
||| |
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|
| T |
13051948 |
tcc |
13051946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 212 - 313
Target Start/End: Complemental strand, 162328 - 162227
Alignment:
| Q |
212 |
taccgaaagccaagtttttccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcca |
311 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
162328 |
taccgaaagccaagttttcccccatgaaggtatacgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtcttgacctcca |
162229 |
T |
|
| Q |
312 |
tc |
313 |
Q |
| |
|
|| |
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|
| T |
162228 |
tc |
162227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 313
Target Start/End: Complemental strand, 103148 - 103047
Alignment:
| Q |
212 |
taccgaaagccaagtttttccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcca |
311 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||| ||||| |||||||||||||||||||| ||| |
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| T |
103148 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgaccgcca |
103049 |
T |
|
| Q |
312 |
tc |
313 |
Q |
| |
|
|| |
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|
| T |
103048 |
tc |
103047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 162567 - 162498
Alignment:
| Q |
12 |
atgaaggtaggatccaaaactcagggggcatcgggttgcatccagaccaatcaaatacaccaagtatcta |
81 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||| |
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| T |
162567 |
atgaaggaaggatccaaaactcagggggcattgggttgcttcccgaccaatcatatacaccaagtatcta |
162498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 103296 - 103227
Alignment:
| Q |
12 |
atgaaggtaggatccaaaactcagggggcatcgggttgcatccagaccaatcaaatacaccaagtatcta |
81 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||| | |||||||||||| |
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| T |
103296 |
atgaaggaaggatccaaaactcagggggcattgggttgcttcccaaccaatcaaagagaccaagtatcta |
103227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 211 - 312
Target Start/End: Original strand, 12138114 - 12138215
Alignment:
| Q |
211 |
ataccgaaagccaagtttttccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12138114 |
ataccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatccactttcttgctcttgcacaagcattgtcttgacctcc |
12138213 |
T |
|
| Q |
311 |
at |
312 |
Q |
| |
|
|| |
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|
| T |
12138214 |
at |
12138215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 93227 - 93328
Alignment:
| Q |
212 |
taccgaaagccaagtttttccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcca |
311 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||||||| |||||| ||| |
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|
| T |
93227 |
taccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgaacacgaatccagtgtcttgctctagcacaagcattgttttgaccgcca |
93326 |
T |
|
| Q |
312 |
tc |
313 |
Q |
| |
|
|| |
|
|
| T |
93327 |
tc |
93328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 93070 - 93139
Alignment:
| Q |
12 |
atgaaggtaggatccaaaactcagggggcatcgggttgcatccagaccaatcaaatacaccaagtatcta |
81 |
Q |
| |
|
||||||| |||| |||||| ||||| ||||| ||||||| |||| ||||||||| | |||||||||||| |
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|
| T |
93070 |
atgaaggaaggagccaaaattcaggtggcattgggttgcttccactccaatcaaaaagaccaagtatcta |
93139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 5670850 - 5670950
Alignment:
| Q |
212 |
taccgaaagccaagtttttccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcca |
311 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | ||| |||||||| |||||| ||||||| ||||||||| | ||||||||||| |||| ||||||| |
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|
| T |
5670850 |
taccgaaagccaaatttttccccatgaaggtacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca |
5670949 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
5670950 |
t |
5670950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 5692596 - 5692696
Alignment:
| Q |
212 |
taccgaaagccaagtttttccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcca |
311 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||| |||||||| |||||| ||||||| ||||||||| | ||||||||||| |||| ||||||| |
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|
| T |
5692596 |
taccgaaagccaaaattttccccatgaaggtacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca |
5692695 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
5692696 |
t |
5692696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 5722940 - 5723040
Alignment:
| Q |
212 |
taccgaaagccaagtttttccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcca |
311 |
Q |
| |
|
|||||||||||| ||||||||||||||| | | ||| |||||||| |||||| ||||||| ||||||||| | ||||||||||| |||| ||||||| |
|
|
| T |
5722940 |
taccgaaagccagatttttccccatgaagacacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca |
5723039 |
T |
|
| Q |
312 |
t |
312 |
Q |
| |
|
| |
|
|
| T |
5723040 |
t |
5723040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 5670697 - 5670754
Alignment:
| Q |
23 |
atccaaaactcagggggcatcgggttgcatccagaccaatcaaatacaccaagtatct |
80 |
Q |
| |
|
|||||||||||||||||||| ||||||| | || ||||||||| | ||||||||||| |
|
|
| T |
5670697 |
atccaaaactcagggggcattgggttgcttgcacgccaatcaaagataccaagtatct |
5670754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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