View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20908_high_11 (Length: 326)
Name: NF20908_high_11
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20908_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 54798656 - 54798520
Alignment:
| Q |
143 |
tagcaccatgtgacaaaaccacatgttcaatgtatgacttgccattaatttaatgaagttttcaggtaaaagtagtcacagaaattaacatggcatatgc |
242 |
Q |
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| T |
54798656 |
tagcaccatgtgacaaaaccacatgttcaatgtatgacttgccattaatttaatgaggttttcaggtaaaagtagtcacagaaattaacatggcatatgc |
54798557 |
T |
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| Q |
243 |
aaaccatatttacatgtctaacaaaacacaaaacact |
279 |
Q |
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| T |
54798556 |
aaaccatatttacatgtctaacaaaacacaaaacact |
54798520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 54798705 - 54798674
Alignment:
| Q |
95 |
tctaatcatgttcaatgtatgtatgaccttgt |
126 |
Q |
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| T |
54798705 |
tctaatcatgttcaatgtatgtatgaccttgt |
54798674 |
T |
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