View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20908_high_2 (Length: 692)
Name: NF20908_high_2
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20908_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 20 - 681
Target Start/End: Original strand, 52630270 - 52630934
Alignment:
| Q |
20 |
ggttgaagagcaattctagctcttgtgatgattccaaattgtccaagaccaccaagaacagaatggaacaagtctgaattacgatcttctgaacacgtca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52630270 |
ggttgaagagcaattctagctcttgtgatgattccaaattgtccaagaccaccaagaacagaatggaacaagtctgaattacgatcttctgaacacgtca |
52630369 |
T |
|
| Q |
120 |
acacctcaccctttcctatattaatacacaagtacacacaccatgacataccaatttgagaacagtactaggacagtgggagaatgaagaatgcatttta |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52630370 |
acacctcaccctttcctatattaatacacaagtacacataccatgacataccaatttgagaacagtactaggacagtgggagaatgaagaatgcatttta |
52630469 |
T |
|
| Q |
220 |
tagcaatgattaattaagtagcaagcaattaacttattattaagtacctgtaactacatctagctcaaaaacattggagatttgaggaccgtgattgaag |
319 |
Q |
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||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52630470 |
tagtagtgattaattaagtagcaagcaattaacttattattaaatacctgtaactacatctagctcaaaaacattggagatttgaggaccgtgattgaag |
52630569 |
T |
|
| Q |
320 |
gtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtccaagacataggtgctaacccatactccaatgttgact |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52630570 |
gtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtccaagacataggtgctaacccatactccaatgttgcct |
52630669 |
T |
|
| Q |
420 |
tcagaacatgtatccataattcaccaccccaaacatccacatacatttctttctcccaaattagaggacccttaattcctacacctccttttcccatttc |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52630670 |
tcagaacatgtatccataattcaccaccccaaacatccacatacatttctttctcccaaactagaggacccttaattcctacacctccttttcccatttc |
52630769 |
T |
|
| Q |
520 |
aatcaccactcctttcatccctgtatctgcttgtccgtttattgagtgtccgtgtcctctcgctgacaccgcaa---acttctgccatttatacgccgct |
616 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
52630770 |
aatcaccactcctttcatccttgtatccgcttgtccgtttattgagtgtccgtgtcctctcgctgacaccgcaaagtactgctgccatttatacgccgct |
52630869 |
T |
|
| Q |
617 |
ttaactacccttgccacgtcattggccgacgctggtcgaaccaccgcaatcgtctctcctttgct |
681 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52630870 |
ttaactacccttgccacgtcattggccgacgctggtcgaaccaccgcaatcgtctctcctttgct |
52630934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 387
Target Start/End: Original strand, 52454570 - 52454641
Alignment:
| Q |
316 |
gaaggtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtccaaga |
387 |
Q |
| |
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||||||||| |||||||||||| ||||||| ||||| ||||| || || |||||||| |||||||||||||| |
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|
| T |
52454570 |
gaaggtttgtccactaataccagcattagagagagttccaccaaccgataaatacaaataatcagtccaaga |
52454641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 17243504 - 17243437
Alignment:
| Q |
320 |
gtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtccaaga |
387 |
Q |
| |
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|||||||| | ||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
17243504 |
gtttggcccccaattccagcattagagagagtgccaccaacagacaaatacaagtaatcagtccaaga |
17243437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 35830472 - 35830413
Alignment:
| Q |
20 |
ggttgaagagcaattctagctcttgtgatgattccaaattgtccaagaccaccaagaaca |
79 |
Q |
| |
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|||| ||||| |||||||||||| |||||||| |||||||| ||||| || ||||||||| |
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| T |
35830472 |
ggttcaagagaaattctagctctagtgatgatgccaaattgaccaagccctccaagaaca |
35830413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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