View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20908_high_3 (Length: 454)
Name: NF20908_high_3
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20908_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 185 - 429
Target Start/End: Complemental strand, 31420618 - 31420374
Alignment:
| Q |
185 |
taagtagaagaaatttacaagtttggttttgcttccactttcagaaactgcaggagttgaatttccagaactagtctcttgaaaatccatcatttttctc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31420618 |
taagtagaagaaatttacaagtttggttttgcttccactttcagaaactgcaggagttgaatttccagaactagtctcttgaaaatccatcatttttctc |
31420519 |
T |
|
| Q |
285 |
tttttaccttcatgatgaactttattttcttcttgaaaaattgttggaagtgaaagttgaactgcattgtgattttgattattgacatgatggacaagac |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31420518 |
tttttaccttcatgatgaactttattttcttcttgaaaaattgttggaagtgaaagttgaactgcattgtgattttgattattgacatgatggacaagac |
31420419 |
T |
|
| Q |
385 |
catgaaaattctcttccaagtttcttggaaacacatgttcttgtt |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31420418 |
catgaaaattctcttccaagtttcttggaaacacatgttcttgtt |
31420374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 31420720 - 31420654
Alignment:
| Q |
91 |
caccactctgaaattaatcatagaaaaataacaaaaccagtttataatttaatttcatcacaatcac |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31420720 |
caccactctgaaattaatcatagaaaaataacaaaaccagtttataatttaatttcatcacaatcac |
31420654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31420810 - 31420775
Alignment:
| Q |
1 |
cagtagcttgacctcttcttgctttaacatgaacaa |
36 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31420810 |
cagtagcttgacctcttcttgctctaacatgaacaa |
31420775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University