View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20908_high_6 (Length: 391)
Name: NF20908_high_6
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20908_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 37449297 - 37448934
Alignment:
| Q |
17 |
agaaaagtcactctccataagttcttcattgcgtatcgattcccaaggtgtctccggctccgattttggctccatcgtcggtggtaatgtggctgtcgac |
116 |
Q |
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| T |
37449297 |
agaaaagtcactctccataagttcttcattgcgtatcgattcccaaggtgtctccggctccgattttggctccatcgtcggcggtaatgtggctgtcgac |
37449198 |
T |
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| Q |
117 |
gtggttgctagtgaggaggtagcttccatcgttgtactgtaacaccgccagccagaataactacgcagttaacctaaatatttgaatccagctgtttaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37449197 |
gtggttgctagtgaggaggtagcttccatcgttgtactgtaacaccgccagccaaaataactacgcagttaacctaaatatttgaatccagctgtttaaa |
37449098 |
T |
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| Q |
217 |
tagagagttaattgggcaggctctgtttttccacccaaaataaataatacagttaattttttgtnnnnnnnnnnnnnnnnnnnnngcttcattaaattat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37449097 |
tagagagttaattgggcaggctctgtttttccacccaaaataaataatacagttaattttttgtaaaaaaaactaaaataaaaaagcttcattaaattat |
37448998 |
T |
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| Q |
317 |
aaaatttggttcaatggtaagaagttgactcatatgatgtggtttaacttccgacctgatgatg |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37448997 |
aaaatttggttcaatggtaagaagttgactcatatgatgtggtttaacttccgacctgatgatg |
37448934 |
T |
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