View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20908_low_10 (Length: 334)
Name: NF20908_low_10
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20908_low_10 |
 | |
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| [»] scaffold0083 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 11779929 - 11779616
Alignment:
| Q |
7 |
tgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagct |
106 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11779929 |
tgaatatcaaaggacttggtgaaaagacacaattgtcattgcttgatagtgattctctatctatgatgcaacatgtagtgattgaaaagtgtgctgagct |
11779830 |
T |
|
| Q |
107 |
atcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctaccc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11779829 |
atcagttgtgccaaaattgattttgagaagcatttgtcttacatacttgagactccattctctttcttctctcactgcatttccctcaagtggtctaccc |
11779730 |
T |
|
| Q |
207 |
acttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatttat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11779729 |
acttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatttat |
11779630 |
T |
|
| Q |
307 |
ggagtagttgtgat |
320 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11779629 |
ggagtagttgtgat |
11779616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 320
Target Start/End: Original strand, 11771356 - 11771669
Alignment:
| Q |
7 |
tgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagct |
106 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||| |
|
|
| T |
11771356 |
tgaatatcaacggccttggtgaaaagacacagttgtcattgcttgatagtgattctctatctatgatgcaacatgtagtgattgaaaagtatgttgagct |
11771455 |
T |
|
| Q |
107 |
atcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctaccc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11771456 |
atcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctaccc |
11771555 |
T |
|
| Q |
207 |
acttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatttat |
306 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11771556 |
acttcattgcaaatacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagctattacacttcacttgtgagtctttatttat |
11771655 |
T |
|
| Q |
307 |
ggagtagttgtgat |
320 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11771656 |
ggagtagttgtgat |
11771669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 308
Target Start/End: Original strand, 9840980 - 9841281
Alignment:
| Q |
7 |
tgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagct |
106 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||| || | |||||||| ||||||||||||||||||||| | | || |
|
|
| T |
9840980 |
tgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccatgtatgatgcaagatgtagtgattgaaaagtgtgttaaact |
9841079 |
T |
|
| Q |
107 |
atcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctaccc |
206 |
Q |
| |
|
|| |||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9841080 |
attagttgttccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcttctctcactgcatttccctcaagtggtctaccc |
9841179 |
T |
|
| Q |
207 |
acttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatttat |
306 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||| |||||| |||||||||||||||||||||| ||||||||||||||| | |||| |
|
|
| T |
9841180 |
acttcattgcaatcacttcatattcgtagttgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagtcttcagttat |
9841279 |
T |
|
| Q |
307 |
gg |
308 |
Q |
| |
|
|| |
|
|
| T |
9841280 |
gg |
9841281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 321
Target Start/End: Complemental strand, 10431991 - 10431674
Alignment:
| Q |
4 |
aagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctga |
103 |
Q |
| |
|
|||| |||||||||||||||| | || ||| | |||||||||||||| |||||||||| | | ||||||||||||||||||||||||| |||| | | |
|
|
| T |
10431991 |
aagttaatatcaatgggcttgacggaaggaccaatttgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagtgattgaaaactgtgttaa |
10431892 |
T |
|
| Q |
104 |
gctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtcta |
203 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10431891 |
gctattagttgtgccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcttctctcactgcatttccatcaagtggtcta |
10431792 |
T |
|
| Q |
204 |
cccacttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatt |
303 |
Q |
| |
|
||||||||||||||||||||| | ||| || | |||||||| |||||||| |||||| |||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
10431791 |
cccacttcattgcaatcacttgaaattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtcagtctttatt |
10431692 |
T |
|
| Q |
304 |
tatggagtagttgtgatt |
321 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
10431691 |
tatggagcagttgtgatt |
10431674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 320
Target Start/End: Original strand, 10129047 - 10129360
Alignment:
| Q |
7 |
tgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagct |
106 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||| | | ||||||||||||||| |||| | || ||| || |||| |
|
|
| T |
10129047 |
tgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagcgattcacaactgttctaagct |
10129146 |
T |
|
| Q |
107 |
atcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctaccc |
206 |
Q |
| |
|
|| || |||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
10129147 |
attagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgagactctattctctttcttctctcactgcatttccctcaagtggactaccc |
10129246 |
T |
|
| Q |
207 |
acttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatttat |
306 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||| |||||||| |||||| |||||||||||||||||||||| |||||||||||| || ||||| |
|
|
| T |
10129247 |
acttcattgcaatcacttcatattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagtattgatttac |
10129346 |
T |
|
| Q |
307 |
ggagtagttgtgat |
320 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10129347 |
ggagtagttgtgat |
10129360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 299
Target Start/End: Original strand, 9851861 - 9852153
Alignment:
| Q |
7 |
tgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagct |
106 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||| | | |||||||| |||||| |||||||||||||| | |||| |
|
|
| T |
9851861 |
tgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaagatgtagagattgaaaagtgtgttaagct |
9851960 |
T |
|
| Q |
107 |
atcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctaccc |
206 |
Q |
| |
|
|| || |||||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
9851961 |
attagctgtgccaaaattgattatgagaagcacttgtcttacacacttgagactcgattcactttcttctctcaatgcatttccatcaagtggtctaccc |
9852060 |
T |
|
| Q |
207 |
acttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctt |
299 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||| |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
9852061 |
acttcattgcaatcacttgatattgaaaattgtgagaatttatccttcctacctcctgaaacatggagcaactacacatcacttgtgagtctt |
9852153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 7 - 299
Target Start/End: Original strand, 10519607 - 10519899
Alignment:
| Q |
7 |
tgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagct |
106 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||| | | |||||||| |||||| |||| ||||||||| | |||| |
|
|
| T |
10519607 |
tgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccttgtatgatgcaagatgtagagattaaaaagtgtgttaagct |
10519706 |
T |
|
| Q |
107 |
atcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctaccc |
206 |
Q |
| |
|
|| || |||||||||||||||| ||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10519707 |
attagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgggactcgattctctttcttctctcactgcatttccctcaagtggtctaccc |
10519806 |
T |
|
| Q |
207 |
acttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctt |
299 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||||| |||||||| || ||| |||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
10519807 |
acttcattgcaatcacttaatattcaatgttgtgagaatttatccttccttcctcctgaaacgtggatcaattacacatcacttgtgagtctt |
10519899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 10034122 - 10034423
Alignment:
| Q |
7 |
tgaatatcaatgggcttg---gtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctga |
103 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| ||||||||||||| |||||||||| | | ||||||||||||||| |||| | || ||| || | |
|
|
| T |
10034122 |
tgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagcgattcacaactgttctaa |
10034221 |
T |
|
| Q |
104 |
gctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtcta |
203 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
10034222 |
gctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttggaactcaattctctttcttctctcactgcatttccctcaagtggacta |
10034321 |
T |
|
| Q |
204 |
cccacttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatt |
303 |
Q |
| |
|
||||||||||||||||||||||||||| | | |||||||| |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10034322 |
cccacttcattgcaatcacttcatattgtaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagtctttatt |
10034421 |
T |
|
| Q |
304 |
ta |
305 |
Q |
| |
|
|| |
|
|
| T |
10034422 |
ta |
10034423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 10582742 - 10583027
Alignment:
| Q |
16 |
atgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagctatcagttgt |
115 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||||||| |||||||||| | | |||||||| ||| |||||| | ||| || | | | |||| || ||| |
|
|
| T |
10582742 |
atgggcttggtgaaaggacccaattgttattgcttgagagtgattctccgtgtatgatgcaagatgcagtgatggcaaactgcgttaacctattagctgt |
10582841 |
T |
|
| Q |
116 |
gccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctacccacttcattg |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
10582842 |
gccaaaattgattctgagaagcacttgtcttacacacttgagactctattctctttcttctctcactacatttccctcaagtggtctacccacttcattg |
10582941 |
T |
|
| Q |
216 |
caatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtcttta |
301 |
Q |
| |
|
|||||||||||||| || |||||||||| |||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
10582942 |
caatcacttcatatcgaaaattgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtgagtcttta |
10583027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 10361739 - 10361461
Alignment:
| Q |
16 |
atgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagctatcagttgt |
115 |
Q |
| |
|
||||||||| || || ||| ||||||||||| |||| || ||||||| || | |||||||||||| ||||||| ||||||| ||| ||| ||| ||| |
|
|
| T |
10361739 |
atgggcttgatggaaggacccaattgtcatttcttgggagcgattctccatgtatgatgcaacatgcagtgattcaaaagtgcgctatgctgtcatctgt |
10361640 |
T |
|
| Q |
116 |
gccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctacccacttcattg |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10361639 |
gccaaaattgattctgagaagcacttgtcttacactcttgggactcggtaatctttcttctctcactgcatttccctcaagtggtctacccacttcattg |
10361540 |
T |
|
| Q |
216 |
caatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtga |
294 |
Q |
| |
|
||||||||||||||| || |||||||||| |||||||| |||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
10361539 |
caatcacttcatattgaaaattgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtga |
10361461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 10090918 - 10091214
Alignment:
| Q |
9 |
aatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagctat |
108 |
Q |
| |
|
|||||| ||||| ||||||||| ||| ||||||||||||||||| |||||||||| || | ||||| || ||||||||||| |||||||||| |||||| |
|
|
| T |
10090918 |
aatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccatgtatgatggaagatgtagtgattcgaaagtgtgctaagctat |
10091017 |
T |
|
| Q |
109 |
cagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctacccac |
208 |
Q |
| |
|
|| | |||||||| ||||| ||||||||||||||| | |||||| |||| |||||||||| ||| || | ||||| ||| |||||||||||||||| |
|
|
| T |
10091018 |
tagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttcatctatcgccgcattaccctcaagtggtctacccac |
10091117 |
T |
|
| Q |
209 |
ttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttattta |
305 |
Q |
| |
|
||||||||||||| || | ||| || |||| ||| |||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
10091118 |
ttcattgcaatcaattgaaattgaattttgtttgaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagactttattta |
10091214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 10262825 - 10263115
Alignment:
| Q |
9 |
aatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagctat |
108 |
Q |
| |
|
|||||| ||||||||| || || ||| ||||||||||||||||| |||||||||| | | |||||||| | ||||| ||| | |||| | || ||| |
|
|
| T |
10262825 |
aatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttat |
10262924 |
T |
|
| Q |
109 |
cagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctacccac |
208 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||||||| ||| |||||| |||| ||||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
10262925 |
tagctgttccaaaattgattctgagaagcacttgtctaacacacttgaaactcagttctcttccttctctcactacatttccctcaagtggtctacccac |
10263024 |
T |
|
| Q |
209 |
ttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctt |
299 |
Q |
| |
|
|||||||||||||||| | ||| | |||||||||| |||||||| || ||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10263025 |
ttcattgcaatcacttgaaattgtaaattgtgagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtctt |
10263115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 10197800 - 10198096
Alignment:
| Q |
9 |
aatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagctat |
108 |
Q |
| |
|
|||||| ||||| ||||||||| ||| ||||||||||||||||| |||||||||| | | ||||| || ||||||||||| |||||||||| |||||| |
|
|
| T |
10197800 |
aatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccgtgtatgatggaagatgtagtgattcgaaagtgtgctaagctat |
10197899 |
T |
|
| Q |
109 |
cagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctacccac |
208 |
Q |
| |
|
|| | |||||||| ||||| ||||||||||||||| | |||||| |||| |||||||||| ||| || | ||||| ||| |||||||||||||||| |
|
|
| T |
10197900 |
tagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttcatctatcgccgcattaccctcaagtggtctacccac |
10197999 |
T |
|
| Q |
209 |
ttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttattta |
305 |
Q |
| |
|
||||||||||||| || | ||| || |||| ||| |||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
10198000 |
ttcattgcaatcaattgaaattgaattttgtttgaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagactttattta |
10198096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 10373792 - 10373490
Alignment:
| Q |
7 |
tgaatatcaatgggcttg---gtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctga |
103 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| ||||||||||||| |||||||||| | | |||||||| | ||||| ||| | |||| | | |
|
|
| T |
10373792 |
tgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaa |
10373693 |
T |
|
| Q |
104 |
gctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtcta |
203 |
Q |
| |
|
| ||| || ||| |||||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10373692 |
gttattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcgattctctttcttctctcactgcatttccctcaagtggtcta |
10373593 |
T |
|
| Q |
204 |
cccacttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatt |
303 |
Q |
| |
|
||||||||||||||||||||| | |||| | | |||||||| |||||||| || ||| ||||| ||||||||||||||| ||||||||| | ||||||| |
|
|
| T |
10373592 |
cccacttcattgcaatcacttgaaattagatactgtgagaatttatccttccttcctcttgaaatgtggagcaattacacatcacttgtgtggctttatt |
10373493 |
T |
|
| Q |
304 |
tat |
306 |
Q |
| |
|
||| |
|
|
| T |
10373492 |
tat |
10373490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 115 - 307
Target Start/End: Original strand, 10665696 - 10665888
Alignment:
| Q |
115 |
tgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctacccacttcatt |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10665696 |
tgccaaaattgattatgagaagcacttgtcttacacacttggcactctattcactttcttctctcactgcatttccctcaagtggtctacccacttcatt |
10665795 |
T |
|
| Q |
215 |
gcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatttatg |
307 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||||| |||||| |||||||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
10665796 |
gcaatcacttaatattttgtggtgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgcgtctagatttatg |
10665888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 10502707 - 10503017
Alignment:
| Q |
9 |
aatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagctat |
108 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| ||||| |||| || | |||||||||||||||| ||| | ||||| | ||||| |
|
|
| T |
10502707 |
aatatcaatgggcttggtgaaaagactcaattatcattgcttgggagtgactctccatgtatgatgcaacatgtagtcatttgtaggtgtgttacgctat |
10502806 |
T |
|
| Q |
109 |
cagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctacccac |
208 |
Q |
| |
|
| | | |||||| |||||| |||||||||||||||| | ||||| |||| || | || | |||||||||| |||||| | |||||||||||| |
|
|
| T |
10502807 |
tatctattccaaaaatgattt-gagaagcacttgtcttcaacacttggaactctatgatattccatctctcactgtgtttcccaaagatggtctacccac |
10502905 |
T |
|
| Q |
209 |
ttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatttatgg |
308 |
Q |
| |
|
||| ||||| |||||| ||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
10502906 |
ttctttgcagtcacttagtattaaaaggtgtgagaatttatcctttcttcctgctgaaacgtggagcaattacacattgcttgtgagtcttgatttatgg |
10503005 |
T |
|
| Q |
309 |
agtagttgtgat |
320 |
Q |
| |
|
||||| |||||| |
|
|
| T |
10503006 |
agtagctgtgat |
10503017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 71 - 320
Target Start/End: Complemental strand, 13853344 - 13853095
Alignment:
| Q |
71 |
gatgcaacatgtagtgattgaaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctt |
170 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||| ||| | ||||||||||||||||||||||||||| |||| | |||||| |||| || | || |
|
|
| T |
13853344 |
gatgcaacatgcagtgattgaaaagtgtgttatgctgtcatctatgccaaaattgattttgagaagcacttttcttcaacacttgaaactctatgatatt |
13853245 |
T |
|
| Q |
171 |
tcttctctcactgcatttcccccaagtggtctacccacttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgt |
270 |
Q |
| |
|
| |||||||||| |||||| |||||||||| || ||| |||||||||||||| | || || | |||||||| ||||| || || ||| ||||||| | |
|
|
| T |
13853244 |
ccatctctcactgtatttccgtcaagtggtctgccaactccattgcaatcacttgaaatagaaaaatgtgagaatttatcattccttcctcctgaaacat |
13853145 |
T |
|
| Q |
271 |
ggagcaattacacttcacttgtgagtctttatttatggagtagttgtgat |
320 |
Q |
| |
|
||||||||||||| || |||| ||||||| |||| ||||||| |||||| |
|
|
| T |
13853144 |
ggagcaattacacatcgcttgcgagtcttactttacggagtagctgtgat |
13853095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 302
Target Start/End: Complemental strand, 11244303 - 11244175
Alignment:
| Q |
174 |
tctctcactgcatttcccccaagtggtctacccacttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtgga |
273 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| |||||| ||||||||||| ||||||| | |||| | || |||||| |||||||||||| |
|
|
| T |
11244303 |
tctctcactgcatttcctacaaatggtctacccacttctttgcaaacacttcatattcgcaattgtgacagcttaacattcctacctcctgaaacgtgga |
11244204 |
T |
|
| Q |
274 |
gcaattacacttcacttgtgagtctttat |
302 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| |
|
|
| T |
11244203 |
gcaattacacatcactggtggctctttat |
11244175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 320
Target Start/End: Original strand, 10530973 - 10531096
Alignment:
| Q |
197 |
tggtctacccacttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagt |
296 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| | |||||||||| ||| | || | ||| ||||||||||||||| ||||| || |||| |||| |
|
|
| T |
10530973 |
tggtctacccacttcattgcagtcactttgtattgataattgtgagaagttagcattcatgcctcctgaaacgtggagcagatacacatcgcttgagagt |
10531072 |
T |
|
| Q |
297 |
ctttatttatggagtagttgtgat |
320 |
Q |
| |
|
||| |||||||||||| |||||| |
|
|
| T |
10531073 |
cttattttatggagtagctgtgat |
10531096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 294
Target Start/End: Original strand, 13397764 - 13397889
Alignment:
| Q |
169 |
tttcttctctcactgcatttcccccaagtggtctacccacttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaac |
268 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||||| |||||||| ||||| ||||||| ||| | || ||| |||| ||| | || | | | ||||||| |
|
|
| T |
13397764 |
tttcctctctcactgcatttccagcaaatggtcttcccacttcgttgcagtcacttcgtatagatgagtgtcagaatttagcattcttgcgtcctgaaac |
13397863 |
T |
|
| Q |
269 |
gtggagcaattacacttcacttgtga |
294 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
13397864 |
atggagcaattacacatcacttgtga |
13397889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 55549 - 55257
Alignment:
| Q |
7 |
tgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagct |
106 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||| | | ||||||||||||||| |||| | || ||| || |||| |
|
|
| T |
55549 |
tgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagcgattcacaactgttctaagct |
55450 |
T |
|
| Q |
107 |
atcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctaccc |
206 |
Q |
| |
|
|| || |||||||||||||||| ||| |||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
55449 |
attagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgaaactccattcactttcttctctcactgcatttccctcaagtggactaccc |
55350 |
T |
|
| Q |
207 |
acttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctt |
299 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||| |||||||| |||||| |||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
55349 |
acttcattgcaatcacttcatattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtcagtctt |
55257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 294
Target Start/End: Original strand, 26909012 - 26909297
Alignment:
| Q |
9 |
aatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtgtgctgagctat |
108 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||||||||||||| | |||||||||| | | |||||||| ||||||||||| |||| |||| || ||||| |
|
|
| T |
26909012 |
aatatccatgggcttggtaaaaggaccatattgtcattgcttaagagtgattctccctgtatgatgcaagatgtagtgattcaaaattgtgttgggctat |
26909111 |
T |
|
| Q |
109 |
cagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctacccac |
208 |
Q |
| |
|
|| | |||||||||||||| |||||||||| |||||| | |||||| |||| |||||||||| ||| || | ||||| ||| |||||||||||||||| |
|
|
| T |
26909112 |
taggtttgccaaaattgattctgagaagcacatgtcttcaacacttgaaactctattctctttcatctatcgccgcattaccctcaagtggtctacccac |
26909211 |
T |
|
| Q |
209 |
ttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtga |
294 |
Q |
| |
|
||||||||||||| || | ||| || |||| ||| |||||||| |||||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
26909212 |
ttcattgcaatcaattgaaattgaattttgtttgaatttatccttcctacctcttgaaacctggagcaattacacatcacttgtga |
26909297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 310
Target Start/End: Complemental strand, 17850765 - 17850570
Alignment:
| Q |
115 |
tgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctacccacttcatt |
214 |
Q |
| |
|
|||| ||| ||||| |||| |||||||||||| | |||||| |||| || | || | ||||||||||||||||| | || || || ||||||||| |
|
|
| T |
17850765 |
tgcctaaaatgattatgaggagcacttgtcttcaacacttgacactcaatgatattccgtctctcactgcatttccgacggatgttcaactcacttcatt |
17850666 |
T |
|
| Q |
215 |
gcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatttatggag |
310 |
Q |
| |
|
||| ||||||||||||| ||| |||| |||||||| | ||| |||||||||||| ||||||||| ||||||| ||||||| | |||||||| |
|
|
| T |
17850665 |
gcagtcacttcatattagtatgtgtaagaatttatccttcatgcctcctgaaacgtggaacaattacacatcacttgcgagtcttgagttatggag |
17850570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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