View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20908_low_16 (Length: 247)

Name: NF20908_low_16
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20908_low_16
NF20908_low_16
[»] chr5 (3 HSPs)
chr5 (1-189)||(13709671-13709861)
chr5 (128-186)||(119347-119405)
chr5 (90-186)||(40193365-40193461)
[»] scaffold0003 (1 HSPs)
scaffold0003 (80-189)||(358175-358284)
[»] chr4 (2 HSPs)
chr4 (83-189)||(45669373-45669479)
chr4 (87-183)||(39920323-39920419)
[»] chr2 (2 HSPs)
chr2 (87-183)||(41770356-41770452)
chr2 (128-184)||(10709638-10709694)
[»] chr8 (1 HSPs)
chr8 (83-182)||(22484247-22484346)
[»] chr7 (2 HSPs)
chr7 (55-85)||(4089150-4089180)
chr7 (90-132)||(4092902-4092944)
[»] chr6 (2 HSPs)
chr6 (90-140)||(8446006-8446056)
chr6 (90-140)||(8454810-8454860)
[»] chr1 (3 HSPs)
chr1 (90-132)||(24763537-24763579)
chr1 (90-132)||(41405926-41405968)
chr1 (87-140)||(42226050-42226103)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 13709671 - 13709861
Alignment:
Q  1 ctcttaatattccaagatcttaaatgggtacacccgccgtcactattacaaataaaaaa--tcaatattttatattcattcattaaagagcaatgataac 98  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  | ||||||||||| ||||||||||||||||||||||||     
T  13709671 ctcttaatattccaagatcttaatttggtacacccgccgtcactattacaaataaaaaaaattaatattttataatcattcattaaagagcaatgataat 13709770  T
Q  99 caaacacaaatttttaaacacaaatacgacaccaaggacattctcgtcatttccaataaagtgcaggggcataattgatttttcagcttaa 189  Q
    |||||||||||||||||||| |||||||| |||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  13709771 caaacacaaatttttaaacataaatacgataccaagaacattctcaacatttccaataaagtgcaggggcataattgatttttcagcttaa 13709861  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 119347 - 119405
Alignment:
Q  128 caccaaggacattctcgtcatttccaataaagtgcaggggcataattgatttttcagct 186  Q
    ||||||||||||| | || |||||||||||||||||||| |||||||||||||| ||||    
T  119347 caccaaggacattttagtaatttccaataaagtgcagggacataattgattttttagct 119405  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 40193461 - 40193365
Alignment:
Q  90 aatgataaccaaacacaaatttttaaacacaaatacgacaccaaggacattctcgtcatttccaataaagtgcaggggcataattgatttttcagct 186  Q
    |||||||||  |||| | ||||| |||||||||||||||| || ||||| | | |  ||||||| ||||  ||||||| |||||||| |||||||||    
T  40193461 aatgataactgaacatacattttcaaacacaaatacgacagcagggacaattttggaatttccattaaaaagcaggggtataattgagttttcagct 40193365  T

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Target: scaffold0003 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 358284 - 358175
Alignment:
Q  80 attaaagagcaatgataaccaaacacaaatttttaaacacaaatacgacaccaaggacattctcgtcatttccaataaagtgcaggggcataattgattt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  358284 attaaagagcaatgataaccaaacacaaatttttaaacacaaatacgacaccaaggacattctcgtcatttccaataaagtgcaggggcataattgattt 358185  T
Q  180 ttcagcttaa 189  Q
    ||||||||||    
T  358184 ttcagcttaa 358175  T

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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 45669479 - 45669373
Alignment:
Q  83 aaagagcaatgataaccaaacacaaatttttaaacacaaatacgacaccaaggacattctcgtcatttccaataaagtgcaggggcataattgatttttc 182  Q
    |||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||||    
T  45669479 aaagagcaatgataactaaacacgaatttttaaacacaaatacaacatcaaggacattctcgtcatttcccataaagtacaggggcatgattgatttttc 45669380  T
Q  183 agcttaa 189  Q
    |||||||    
T  45669379 agcttaa 45669373  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 39920323 - 39920419
Alignment:
Q  87 agcaatgataaccaaacacaaatttttaaacacaaatacgacaccaaggacattctcgtcatttccaataaagtgcaggggcataattgatttttca 183  Q
    |||| ||||||| ||||||| | | ||| |||||||||||||||||| | ||  ||||| |||||||  |||||| | |||||||||||||||||||    
T  39920323 agcagtgataactaaacacataatcttagacacaaatacgacaccaatggcaaactcgtaatttccaccaaagtgaaagggcataattgatttttca 39920419  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 41770452 - 41770356
Alignment:
Q  87 agcaatgataaccaaacacaaatttttaaacacaaatacgacaccaaggacattctcgtcatttccaataaagtgcaggggcataattgatttttca 183  Q
    |||| ||||||  ||||||| ||| ||| |||||||||||||||||| | ||  ||||| ||||||| ||||||||| |||||||||||||||||||    
T  41770452 agcagtgataattaaacacatattcttagacacaaatacgacaccaatggcaaactcgtaatttccactaaagtgcaagggcataattgatttttca 41770356  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 10709638 - 10709694
Alignment:
Q  128 caccaaggacattctcgtcatttccaataaagtgcaggggcataattgatttttcag 184  Q
    ||||||||||||| | || ||||||| |||| |||| | ||||||||||||||||||    
T  10709638 caccaaggacattttagtaatttccagtaaaatgcaagcgcataattgatttttcag 10709694  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 22484247 - 22484346
Alignment:
Q  83 aaagagcaatgataaccaaacacaaatttttaaacacaaatacgacaccaaggacattctcgtcatttccaataaagtgcaggggcataattgatttttc 182  Q
    |||||| ||||||||| ||||||| |||| |  ||||||||||||||||| ||| ||||| || |||| ||   ||||||| |||||| |||| ||||||    
T  22484247 aaagagaaatgataactaaacacacatttgttgacacaaatacgacaccatggatattcttgtaattttcatacaagtgcaagggcatgattggtttttc 22484346  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 85
Target Start/End: Original strand, 4089150 - 4089180
Alignment:
Q  55 aaaaatcaatattttatattcattcattaaa 85  Q
    |||||||||||||||||||||||||||||||    
T  4089150 aaaaatcaatattttatattcattcattaaa 4089180  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 4092902 - 4092944
Alignment:
Q  90 aatgataaccaaacacaaatttttaaacacaaatacgacacca 132  Q
    ||||||||||||||||||||| | |||||||||||| ||||||    
T  4092902 aatgataaccaaacacaaattatcaaacacaaatacaacacca 4092944  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 8446006 - 8446056
Alignment:
Q  90 aatgataaccaaacacaaatttttaaacacaaatacgacaccaaggacatt 140  Q
    |||||||| |||||||||||||||  |||||||||||||| ||| ||||||    
T  8446006 aatgataaacaaacacaaattttttgacacaaatacgacatcaatgacatt 8446056  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 8454810 - 8454860
Alignment:
Q  90 aatgataaccaaacacaaatttttaaacacaaatacgacaccaaggacatt 140  Q
    |||||||| |||||||||||||||  |||||||||||||| ||| ||||||    
T  8454810 aatgataaacaaacacaaattttttgacacaaatacgacatcaatgacatt 8454860  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 24763537 - 24763579
Alignment:
Q  90 aatgataaccaaacacaaatttttaaacacaaatacgacacca 132  Q
    ||||||||||||||||||||| ||| |||||||||| ||||||    
T  24763537 aatgataaccaaacacaaattattagacacaaatacaacacca 24763579  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 41405968 - 41405926
Alignment:
Q  90 aatgataaccaaacacaaatttttaaacacaaatacgacacca 132  Q
    ||||||||||||||||||||||| | |||||||||| ||||||    
T  41405968 aatgataaccaaacacaaattttgagacacaaatacaacacca 41405926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 42226050 - 42226103
Alignment:
Q  87 agcaatgataaccaaacacaaatttttaaacacaaatacgacaccaaggacatt 140  Q
    |||||||||||| | ||||| | ||||| |||||||||| ||||||||||||||    
T  42226050 agcaatgataactagacacacaattttagacacaaatacaacaccaaggacatt 42226103  T

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