View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20908_low_17 (Length: 244)

Name: NF20908_low_17
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20908_low_17
NF20908_low_17
[»] chr6 (23 HSPs)
chr6 (13-227)||(27609486-27609700)
chr6 (13-227)||(27696955-27697169)
chr6 (13-227)||(27716865-27717079)
chr6 (13-227)||(27680564-27680778)
chr6 (13-187)||(27704669-27704843)
chr6 (13-207)||(27591401-27591595)
chr6 (13-148)||(26648072-26648207)
chr6 (13-148)||(26754040-26754175)
chr6 (13-207)||(27675998-27676194)
chr6 (23-193)||(28787865-28788035)
chr6 (23-193)||(28793986-28794156)
chr6 (13-148)||(26624864-26624999)
chr6 (13-148)||(26730841-26730976)
chr6 (13-148)||(31286158-31286293)
chr6 (13-207)||(27603080-27603275)
chr6 (13-228)||(26804060-26804276)
chr6 (33-112)||(26813171-26813250)
chr6 (23-115)||(26863183-26863275)
chr6 (62-112)||(27529788-27529838)
chr6 (13-72)||(26885684-26885743)
chr6 (13-129)||(27663671-27663783)
chr6 (13-115)||(25491785-25491887)
chr6 (15-88)||(26960729-26960802)
[»] chr8 (1 HSPs)
chr8 (13-227)||(29272204-29272418)
[»] scaffold0349 (1 HSPs)
scaffold0349 (13-148)||(1984-2119)
[»] scaffold1870 (1 HSPs)
scaffold1870 (23-207)||(393-578)
[»] chr1 (1 HSPs)
chr1 (13-187)||(266755-266929)
[»] scaffold0277 (2 HSPs)
scaffold0277 (24-207)||(3088-3272)
scaffold0277 (24-207)||(12051-12235)
[»] scaffold0419 (1 HSPs)
scaffold0419 (23-207)||(9111-9297)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 27609700 - 27609486
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  27609700 aagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatcta 27609601  T
Q  113 tgatcatttggttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaata 212  Q
    ||||||||| ||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27609600 tgatcattttgttatttagttttaatacgactttgctctttttgcactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaata 27609501  T
Q  213 tttctatatcttatt 227  Q
    | ||||| |||||||    
T  27609500 tatctatgtcttatt 27609486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 27697169 - 27696955
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||  ||| || |||| ||||||||||||||||||||||||||||||    
T  27697169 aagaatcaactaaagagcctggagaaagaagtaggttatgctgtcaggatgatataactcgggttttaagagaaaacactgtgagtaagattgatatcta 27697070  T
Q  113 tgatcatttggttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaata 212  Q
    ||||||||| ||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27697069 tgatcattttgttatttagttttaatacgactttgctctatttgcactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaata 27696970  T
Q  213 tttctatatcttatt 227  Q
    |||||||||||||||    
T  27696969 tttctatatcttatt 27696955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 27717079 - 27716865
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  27717079 aagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatcta 27716980  T
Q  113 tgatcatttggttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaata 212  Q
    ||||||||| |||||||||||||||||| |||||||       | ||||||||||||||||| | || ||||||||||||||||||||||||||||||||    
T  27716979 tgatcattttgttatttagttttaatacaactttgctctttttgaactaaatatgatcatctaaaacgagcatttcttttcactcaattacatgttaata 27716880  T
Q  213 tttctatatcttatt 227  Q
    |||||||||||||||    
T  27716879 tttctatatcttatt 27716865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 27680564 - 27680778
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||  |||||||||||||||| |||||||||||||  | || || |||||| ||| ||| |||||||||||||||||||||| ||||||||||||    
T  27680564 aagaatcacctaaagagcctggagaacgaagtaggttatggcgtcaagaagatataattcatgttttaaaagaaaacactgtgagtatgattgatatcta 27680663  T
Q  113 tgatcatttggttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaata 212  Q
    ||||||||| ||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27680664 tgatcattttgttatttagttttaatacgactttgctctttttgcactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaata 27680763  T
Q  213 tttctatatcttatt 227  Q
    | ||||| |||||||    
T  27680764 tatctatgtcttatt 27680778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 27704843 - 27704669
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  27704843 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccatgatgatatagttaatgtcttaaaagaaaacactgtgagtaagattgatatcta 27704744  T
Q  113 tgatcatttggttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcattt 187  Q
    ||||||||| ||||||||||||||||| ||||||||       ||||||||||||| ||||| ||||||| ||||    
T  27704743 tgatcattttgttatttagttttaatatgactttgctctttttggactaaatatgaccatctcatactagtattt 27704669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 27591595 - 27591401
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||  ||||||||||||||||||||| |||||||| |  || ||||||||||||| ||| |||||||||||||||||| ||||||||||||||||    
T  27591595 aagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgttttaaaagaaaacactgtgcgtaagattgatatcta 27591496  T
Q  113 tgatcatttggttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttcttttcactcaattacatgt 207  Q
    || ||| || |||||||||||||||||| |||||||       ||||||||||||| ||||| ||||||| || | ||| |||| ||||||||||    
T  27591495 tgttcaatttgttatttagttttaatacaactttgctcattttggactaaatatgaccatctcatactagtatatttttccacttaattacatgt 27591401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 26648072 - 26648207
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||  ||||||||||||||||  |||||||||||| || || ||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||    
T  26648072 aagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaagaaaacactgtgagtaagattaatatcta 26648171  T
Q  113 tgatcatttggttatttagttttaatacgactttgc 148  Q
    |||||| || ||||||||||||||||||||||||||    
T  26648172 tgatcaatttgttatttagttttaatacgactttgc 26648207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 26754040 - 26754175
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||  ||||||||||||||||  |||||||||||| || || ||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||    
T  26754040 aagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaagaaaacactgtgagtaagattaatatcta 26754139  T
Q  113 tgatcatttggttatttagttttaatacgactttgc 148  Q
    |||||| || ||||||||||||||||||||||||||    
T  26754140 tgatcaatttgttatttagttttaatacgactttgc 26754175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 27676194 - 27675998
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||  ||||||||||||||||||||| |||||||| |  || ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  27676194 aagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgttttaacagaaaacactgtgagtaagattgatatcta 27676095  T
Q  113 tgatcatttggttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttctttt--cactcaattacatgt 207  Q
    || ||| || |||||||||||||||||| | |||||       ||||||||||||| ||||| ||| ||| |||| ||||  |||| ||||||||||    
T  27676094 tgttcaatttgttatttagttttaatacaattttgctcattttggactaaatatgaccatctcatattagtatttttttttccacttaattacatgt 27675998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 28787865 - 28788035
Alignment:
Q  23 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatctatgatcatttg 122  Q
    |||||||||||||||||||||||||||||| || || ||||||||||||  ||| |||||||||||||| ||||||| ||||||||| |||| ||| ||     
T  28787865 taaagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacaccgtgagtatgattgatatttatgttcaattt 28787964  T
Q  123 gttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttcttttc 193  Q
    |||||||| |||| ||||||||||||       ||||||||||||| ||||| ||||||| |||| |||||    
T  28787965 gttatttaattttgatacgactttgctctttttggactaaatatgaccatctcatactagtatttgttttc 28788035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 28793986 - 28794156
Alignment:
Q  23 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatctatgatcatttg 122  Q
    |||||||||||||||||||||||||||||| || || ||||||||||||  ||| |||||||||||||| ||||||| ||||||||| |||| ||| ||     
T  28793986 taaagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacaccgtgagtatgattgatatttatgttcaattt 28794085  T
Q  123 gttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttcttttc 193  Q
    |||||||| |||| ||||||||||||       ||||||||||||| ||||| ||||||| |||| |||||    
T  28794086 gttatttaattttgatacgactttgctctttttggactaaatatgaccatctcatactagtatttgttttc 28794156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 26624864 - 26624999
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||  |||||||||||||||| ||||||| ||||| || || ||||||||| ||| ||| ||||||||||||| |||||||||||||||||||||    
T  26624864 aagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttttaaaagaaaacagtgtgagtaagattgatatcta 26624963  T
Q  113 tgatcatttggttatttagttttaatacgactttgc 148  Q
    |||||| ||  ||||||||||||||||| |||||||    
T  26624964 tgatcaatttattatttagttttaatactactttgc 26624999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 26730841 - 26730976
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||  |||||||||||||||| ||||||| ||||| || || ||||||||| ||| ||| ||||||||||||| |||||||||||||||||||||    
T  26730841 aagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttttaaaagaaaacagtgtgagtaagattgatatcta 26730940  T
Q  113 tgatcatttggttatttagttttaatacgactttgc 148  Q
    |||||| ||  ||||||||||||||||| |||||||    
T  26730941 tgatcaatttattatttagttttaatactactttgc 26730976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 31286158 - 31286293
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||  ||||||||| ||||||||||||||| |||| || || ||||||||||||| ||  ||||| |||||||||||||||||||||||||||||    
T  31286158 aagaatcacctaaagagccaggagaaagaagtaggctatggtgtcaagatgatatagttcatgctttaaatgaaaacactgtgagtaagattgatatcta 31286257  T
Q  113 tgatcatttggttatttagttttaatacgactttgc 148  Q
    || ||| || ||||||||||||||| ||||||||||    
T  31286258 tgttcaatttgttatttagttttaaaacgactttgc 31286293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 27603275 - 27603080
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||  |||||||||||||||||||||||||||||| || || || |||||||||| |||  ||| ||||||||||||||||||||||||||| ||    
T  27603275 aagaatcacctaaagagcctggagaaagaagtaggttatggtgtcaagacgatatagttcatgttctaacagaaaacactgtgagtaagattgatatata 27603176  T
Q  113 tgatcatttggttatttagttttaatacgac-tttgcnnnnnnnggactaaatatgatcatctgatactagcatttcttttcactcaattacatgt 207  Q
      |||| || ||||||||||||||||| ||| ||||        ||||||||||||||||||| ||||||  |||| ||| |||| ||||||||||    
T  27603175 atatcaatttgttatttagttttaatatgacttttggtctttttggactaaatatgatcatctcatactattatttttttccacttaattacatgt 27603080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 26804060 - 26804276
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||  |||||| |||| | || |||||||||||||  | || || |||||||||| |||  |||||||||||| |||||||||||||||||| ||    
T  26804060 aagaatcacctaaagatcctgaaaaacgaagtaggttatggcgtcatgaagatatagttcatgttataaaagaaaacattgtgagtaagattgatattta 26804159  T
Q  113 tgatcatttggttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagca-tttcttttcactcaattacatgttaat 211  Q
    || ||| || ||||||||||||  ||||||||||||       |||||| |||||| ||||| ||||||| | ||| |||||||| |||||||| | |||    
T  26804160 tgttcaatttgttatttagtttagatacgactttgcatttttaggactacatatgaccatctcatactagtatttttttttcacttaattacatataaat 26804259  T
Q  212 atttctatatcttattg 228  Q
     | ||||||||||||||    
T  26804260 ttctctatatcttattg 26804276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 26813171 - 26813250
Alignment:
Q  33 ggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    |||||| |||||||| |||| || || ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  26813171 ggagaacgaagtaggctatggtgtcaagatgatatagttcatgttttaaaagaaaacattgtgagtaagattgatatcta 26813250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 26863183 - 26863275
Alignment:
Q  23 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatctatga 115  Q
    ||||||||| || ||| ||||||||||||| || || ||||||||| | |  || ||| |||||||||||||||||||||||||||| |||||    
T  26863183 taaagagccgggtgaacgaagtaggttatggtgtcatgatgatataatccacgttttagaagaaaacactgtgagtaagattgatatttatga 26863275  T

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Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 27529838 - 27529788
Alignment:
Q  62 tgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  27529838 tgatatagttcatgttttaaaaaaaaacactgtgagtaagattgatatcta 27529788  T

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Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 26885684 - 26885743
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttc 72  Q
    ||||||||| |||||||||||||||| | ||||||||||| || || |||||||||||||    
T  26885684 aagaatcaagtaaagagcctggagaacgtagtaggttatggtgtcacgatgatatagttc 26885743  T

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Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 27663783 - 27663671
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    |||||||||||||||||||||||||  | | |||||| ||  | || |||||||||| || ||| |||||| |||||||    |||||||||||||||||    
T  27663783 aagaatcaattaaagagcctggagagcgcactaggttgtggcgtcatgatgatatagctcatgttttaaaacaaaacac----agtaagattgatatcta 27663688  T
Q  113 tgatcatttggttattt 129  Q
    ||| || || |||||||    
T  27663687 tgaacaatttgttattt 27663671  T

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Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 25491887 - 25491785
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||  ||| || ||||||||| | |||||||| || || |  |||||||| ||||  || |||| ||||||||| || |||||||||||||||||    
T  25491887 aagaatcacgtaatgatcctggagaacgtagtaggttgtggtgtcccgatgatatggttcaagttttaagagaaaacacggtaagtaagattgatatcta 25491788  T
Q  113 tga 115  Q
    |||    
T  25491787 tga 25491785  T

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Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 26960729 - 26960802
Alignment:
Q  15 gaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaa 88  Q
    ||||||||||||||||||||| || | |||||||| || || |  ||||||||||||| ||| ||| |||||||    
T  26960729 gaatcaattaaagagcctggaaaacgcagtaggttgtggtgtcgtgatgatatagttcatgttttacaagaaaa 26960802  T

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Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 29272418 - 29272204
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||    
T  29272418 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatctagttcgtgttttaagagaaaacactgtgagtaagattgatatcta 29272319  T
Q  113 tgatcatttggttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaata 212  Q
    ||||||||| ||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||    
T  29272318 tgatcattttgttatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttattttcactcaattgcatgttaata 29272219  T
Q  213 tttctatatcttatt 227  Q
    ||| || ||||||||    
T  29272218 tttgtacatcttatt 29272204  T

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Target: scaffold0349 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 2119 - 1984
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  2119 aagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatcta 2020  T
Q  113 tgatcatttggttatttagttttaatacgactttgc 148  Q
    ||||||||| |||||||||||||||||| |||||||    
T  2019 tgatcattttgttatttagttttaatacaactttgc 1984  T

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Target: scaffold1870 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 393 - 578
Alignment:
Q  23 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatctatgatcatttg 122  Q
    ||||||||| |||||||||||||||||||| || || ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||| ||     
T  393 taaagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaattt 492  T
Q  123 gttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttctttt-cactcaattacatgt 207  Q
    ||||||||||||| ||| ||||||||       ||||||||||||| ||||| ||||||| |||| |||| |||| ||||||||||    
T  493 gttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattttttttccacttaattacatgt 578  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 266929 - 266755
Alignment:
Q  13 aagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatcta 112  Q
    ||||||||  |||||||||||||||| ||||||||||||| || || ||||||||||||| ||| |||||  |||||||||||||||||||||||||| |    
T  266929 aagaatcacctaaagagcctggagaacgaagtaggttatggtgtcaagatgatatagttcatgttttaaataaaaacactgtgagtaagattgatatcaa 266830  T
Q  113 tgatcatttggttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcattt 187  Q
    |||||| || ||||||||||||||||||||||||||       |||| |||||||| ||||| ||||||| ||||    
T  266829 tgatcaatttgttatttagttttaatacgactttgctctttttggacaaaatatgaccatctcatactagtattt 266755  T

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Target: scaffold0277 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 3272 - 3088
Alignment:
Q  24 aaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatctatgatcatttgg 123  Q
    ||||||||||||||||||||||| ||||| ||  | ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||| || |    
T  3272 aaagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaatttg 3173  T
Q  124 ttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttctttt-cactcaattacatgt 207  Q
    |||||||||||| ||| ||||||||       ||||||||||||| ||||| ||||||| |||| |||| |||| ||||||||||    
T  3172 ttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattttttttccacttaattacatgt 3088  T

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Target: scaffold0277; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 12235 - 12051
Alignment:
Q  24 aaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatctatgatcatttgg 123  Q
    ||||||||||||||||||||||| ||||| ||  | ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||| || |    
T  12235 aaagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaatttg 12136  T
Q  124 ttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttctttt-cactcaattacatgt 207  Q
    |||||||||||| ||| ||||||||       ||||||||||||| ||||| ||||||| |||| |||| |||| ||||||||||    
T  12135 ttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattttttttccacttaattacatgt 12051  T

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Target: scaffold0419 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 9111 - 9297
Alignment:
Q  23 taaagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtcttaaaagaaaacactgtgagtaagattgatatctatgatcatttg 122  Q
    ||||||||| |||||||||||||||||||| || || ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||| ||     
T  9111 taaagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaattt 9210  T
Q  123 gttatttagttttaatacgactttgcnnnnnnnggactaaatatgatcatctgatactagcatttctttt--cactcaattacatgt 207  Q
    ||||||||||||| ||| ||||||||       ||||||||||||| ||||| ||| ||| |||| ||||  |||| ||||||||||    
T  9211 gttatttagttttgatatgactttgctctttttggactaaatatgaccatctcatattagtatttttttttccacttaattacatgt 9297  T

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