View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20908_low_18 (Length: 241)
Name: NF20908_low_18
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20908_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 36876698 - 36876469
Alignment:
| Q |
4 |
tcaaccttgacctctctcacatgttccaacatcgtctctctataccatactgacatatccttcattgctcattcttttccttacctccaacaactggata |
103 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36876698 |
tcaaccttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattcttttcctttcctccaacaactggata |
36876599 |
T |
|
| Q |
104 |
tcagtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctcttaaggctcttactcaaaagctttcaaaactccgcaaggt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||||||| |
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| T |
36876598 |
tcagtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggt |
36876499 |
T |
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| Q |
204 |
taacctctctggtaatttctatattgatga |
233 |
Q |
| |
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||| |||||||||||||||| ||| |||| |
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| T |
36876498 |
taatttctctggtaatttctacattaatga |
36876469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 33397613 - 33397401
Alignment:
| Q |
3 |
atcaaccttgacctctctcacatgttccaacatcgtctctctataccatactgacatatccttcattgctcattcttttccttacctccaacaactggat |
102 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| || |||| |||||||||| ||||| |
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| T |
33397613 |
atcaaccttgacctctctcacttgttccaacatcggctctctataccatactgacatatccttcattgccgattccttccctttcctccaacaattggat |
33397514 |
T |
|
| Q |
103 |
atcagtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctcttaaggctcttactcaaaagctttcaaaactccgcaagg |
202 |
Q |
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| T |
33397513 |
atcagttaccctaaaataatcacc---aat------gacagtgacaattataataatgctttgaagcttctcactcaaaagctttcaaaactccgcaagg |
33397423 |
T |
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| Q |
203 |
ttaacctctctggtaatttcta |
224 |
Q |
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|||| ||||||||| ||||||| |
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| T |
33397422 |
ttaatctctctggtcatttcta |
33397401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 27004755 - 27004955
Alignment:
| Q |
7 |
accttgacctctctcacatgttccaacatcgtctctctataccatactgacatatccttcattgctcattcttttccttacctccaacaactggatatca |
106 |
Q |
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|||||||||||||||||||||||||| || | ||||||| ||| ||| |||||||||| || || |||| || || | |||||||||| ||||||||| |
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| T |
27004755 |
accttgacctctctcacatgttccaatatggcttctctatgccacactcacatatccttgatcgcagattcattccccttcctccaacaattggatatca |
27004854 |
T |
|
| Q |
107 |
gtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctcttaaggctcttactcaaaagctttcaaaactccgcaaggttaa |
206 |
Q |
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| T |
27004855 |
gtttccctaaaacaatatctggtaatg---------ctcatgcttattacaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaa |
27004945 |
T |
|
| Q |
207 |
cctctctggt |
216 |
Q |
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||||||||| |
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| T |
27004946 |
tctctctggt |
27004955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 36810180 - 36810225
Alignment:
| Q |
189 |
aaaactccgcaaggttaacctctctggtaatttctatattgatgat |
234 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36810180 |
aaaactccacaaggttaacctctctggtaatttctatattgatgat |
36810225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 33093052 - 33093120
Alignment:
| Q |
157 |
aatgctcttaaggctcttactcaaaagctttcaaaactccgcaaggttaacctctctggtaatttctat |
225 |
Q |
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|||||| | |||| |||| |||||||||||| |||||||||||||||||| ||||| |||||||||||| |
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| T |
33093052 |
aatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatctctcaggtaatttctat |
33093120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 37579955 - 37580004
Alignment:
| Q |
157 |
aatgctcttaaggctcttactcaaaagctttcaaaactccgcaaggttaa |
206 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||| |||||||||| |
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| T |
37579955 |
aatgctctaaaggttcttactcaaaagctttcaaaactctgcaaggttaa |
37580004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 18723546 - 18723614
Alignment:
| Q |
166 |
aaggctcttactcaaaagctttcaaaactccgcaaggttaacctctctggtaatttctatattgatgat |
234 |
Q |
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|||| ||||||||||| |||||||||||||||||| ||||| || ||||||||| |||| ||| ||||| |
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| T |
18723546 |
aaggttcttactcaaaggctttcaaaactccgcaaagttaatctttctggtaatatctacattaatgat |
18723614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 1755578 - 1755546
Alignment:
| Q |
5 |
caaccttgacctctctcacatgttccaacatcg |
37 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
1755578 |
caactttgacctctctcacatgttccaacatcg |
1755546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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