View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20908_low_20 (Length: 236)
Name: NF20908_low_20
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20908_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2361430 - 2361649
Alignment:
| Q |
1 |
atacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactattaagcttg |
100 |
Q |
| |
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|||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2361430 |
atacttggtcacctacaactattaaaaaattcacaaaaacctcatagaaccttaggtgcattggctgataaatatggacccttgttcactattaagcttg |
2361529 |
T |
|
| Q |
101 |
gttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttagcaatatccaatcgccctaaacttgaagcaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2361530 |
gttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttggcaatatccaatcgccctaaacttgaagcaac |
2361629 |
T |
|
| Q |
201 |
tcaacatttgggttacaatg |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
2361630 |
tcaacatttgggttacaatg |
2361649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 2366034 - 2366231
Alignment:
| Q |
1 |
atacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactattaagcttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
2366034 |
atacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgcattggctgataaatatggacccttgttcactattaagattg |
2366133 |
T |
|
| Q |
101 |
gttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttagcaatatccaatcgccctaaacttgaagca |
198 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||| |
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| T |
2366134 |
gttccaaacgtgctttggttcttagcaattgggaaatggcaaaggaatgtttcaccaaaattgacttggcaatatccactcgccctaaaggtgaagca |
2366231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2355747 - 2355966
Alignment:
| Q |
1 |
atacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactattaagcttg |
100 |
Q |
| |
|
|||||||||||||||||| | |||| |||| || |||| |||||||| ||||||| || |||||||||||||||||||||||||| || || |||| |
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| T |
2355747 |
atacttggtcacctcccattgttaaaggcttccaaagcaccacatagaactttaggtgatttagctgataaatatggacccttgttcaccatcaaacttg |
2355846 |
T |
|
| Q |
101 |
gttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttagcaatatccaatcgccctaaacttgaagcaac |
200 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||||||||| |||||||||||||| ||| ||||| | ||||| |||| ||| |||||||||| ||||| |
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| T |
2355847 |
gttccaaaaatgctttggtacttagcaattcggaaatggcgaaggaatgtttcaccaaatttgacgttgcaatttccactcgtcctaaacttgttgcaac |
2355946 |
T |
|
| Q |
201 |
tcaacatttgggttacaatg |
220 |
Q |
| |
|
| ||||||||| |||||||| |
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|
| T |
2355947 |
tgaacatttggcttacaatg |
2355966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 2305757 - 2305877
Alignment:
| Q |
32 |
cacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattg |
131 |
Q |
| |
|
|||||||||| ||||| ||||||| |||| ||||||||||||||||| || ||||| || ||||||||||| ||||||||||| || | | |||||| |
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|
| T |
2305757 |
cacaatcaccccatagggtcttaggtaccttagctgataaatatggaccattattcaccatcaagcttggttctaaacgtgctttaattctcaacaattg |
2305856 |
T |
|
| Q |
132 |
ggaaatggcaaaggaatgttt |
152 |
Q |
| |
|
||||||||| ||||||||||| |
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|
| T |
2305857 |
ggaaatggccaaggaatgttt |
2305877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 2338078 - 2338201
Alignment:
| Q |
32 |
cacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattg |
131 |
Q |
| |
|
|||||||||| |||||| ||||||| |||| ||||||||||||||||| || ||||| || |||||||| | |||| |||||| | | | |||||| |
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|
| T |
2338078 |
cacaatcaccccatagagtcttaggtaccttagctgataaatatggaccattattcaccatcaagcttggcactaaacatgctttaatactcaacaattg |
2338177 |
T |
|
| Q |
132 |
ggaaatggcaaaggaatgtttcac |
155 |
Q |
| |
|
||||||||| |||||||||||||| |
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|
| T |
2338178 |
ggaaatggccaaggaatgtttcac |
2338201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 2349159 - 2349250
Alignment:
| Q |
64 |
gctgataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcac |
155 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||| |||| |||||| | ||| |||||||||||| || |||||||||||||| |
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|
| T |
2349159 |
gctgataaatatggaccaatattcactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcac |
2349250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 2264136 - 2264031
Alignment:
| Q |
38 |
cacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattgggaaat |
137 |
Q |
| |
|
||||||||| ||| ||||| || ||||| | |||||||||||| | ||||| || || |||||| | || ||||||||||| | |||||||||||||| |
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|
| T |
2264136 |
cacctcataaaacattaggcaccatggctaacaaatatggacccctattcaccataaaacttggtacaaatcgtgctttggtactaagcaattgggaaat |
2264037 |
T |
|
| Q |
138 |
ggcaaa |
143 |
Q |
| |
|
|||||| |
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|
| T |
2264036 |
ggcaaa |
2264031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4303192 - 4303411
Alignment:
| Q |
1 |
atacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactattaagcttg |
100 |
Q |
| |
|
|||||||||||||| | |||||| | ||||||| ||||||||||||||||||||| |||||||| | ||||||||| || ||||| || || |||| |
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|
| T |
4303192 |
atacttggtcaccttcaactattgttaggttcacaaggacctcatagaaccttaggtgcattggctgacacatatggacctttattcacaatcaaacttg |
4303291 |
T |
|
| Q |
101 |
gttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttagcaatatccaatcgccctaaacttgaagcaac |
200 |
Q |
| |
|
|||| | | ||||||||| | || |||||||||||||| ||||||||||||| ||||||||||| ||||| ||| ||||||||| ||||||| |||| |
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|
| T |
4303292 |
gttcgagaaatgctttggtgctaagtaattgggaaatggctgaggaatgtttcaccaaaattgacttggcaatttccgatcgccctacacttgaaacaac |
4303391 |
T |
|
| Q |
201 |
tcaacatttgggttacaatg |
220 |
Q |
| |
|
||||||| || |||||||| |
|
|
| T |
4303392 |
tcaacatatgacttacaatg |
4303411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 41340088 - 41340195
Alignment:
| Q |
113 |
ctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttagcaatatccaatcgccctaaacttgaagcaactcaacatttggg |
212 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| || ||| ||||||| ||| | || ||||||||||||||||||| |||| ||||||||| |
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|
| T |
41340088 |
ctttggtgcttagcaattgggaaatggctgaggaatgttttaccaaagttgacttggcagtttcaaatcgccctaaacttgaagtaactaaacatttggc |
41340187 |
T |
|
| Q |
213 |
ttacaatg |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
41340188 |
ttacaatg |
41340195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 5806216 - 5806093
Alignment:
| Q |
32 |
cacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattg |
131 |
Q |
| |
|
||||| |||| ||||||| |||||||||| | | ||||||| ||||||| | ||||| || ||||||||| | |||| ||| || || | | |||||| |
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|
| T |
5806216 |
cacaagcaccccatagaatcttaggtgccctaggtgataaacatggaccaatattcaccatcaagcttggtcctaaacatgccttagtactcaacaattg |
5806117 |
T |
|
| Q |
132 |
ggaaatggcaaaggaatgtttcac |
155 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
5806116 |
ggaaatggctaaggaatgtttcac |
5806093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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