View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20908_low_4 (Length: 450)
Name: NF20908_low_4
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20908_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 188 - 446
Target Start/End: Original strand, 1738009 - 1738274
Alignment:
| Q |
188 |
aatcaagccaaatgggtggaagatgtcaatgatacact------actagatctacatacttccattcatgaaattaccaatgactcatttctaaaagaaa |
281 |
Q |
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| T |
1738009 |
aatcaagccaaatgggtggaagatgtcaatggtacacttacactactagatctacatactgccattcatgaaattaccaatgactcatttctaaaagaaa |
1738108 |
T |
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| Q |
282 |
gctccttttatt-atttttgtttagtttgacttacataaccaacatgagtgcacttattttattttttacaaacatgagtgcacttgaaacttcaacggc |
380 |
Q |
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| T |
1738109 |
gctccttttatttatttttgtttagtttgacttacataaccaacatgagtgcacttattttattttttacaaacatgagtgcacttgaaacttcaacggc |
1738208 |
T |
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| Q |
381 |
attattttagtgatggtgattgataactatatatatatgcacttcttttccctgcctttgctactc |
446 |
Q |
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| T |
1738209 |
attattttagtgatggagattgataactatatatatatgcacttcttttccctgcctttgctactc |
1738274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 58 - 389
Target Start/End: Original strand, 1716485 - 1716829
Alignment:
| Q |
58 |
gtgagtagaactattaagttttgaaataacctaaattaaacagtct-gagtttcggctagatgtgggaaataaggtgaatttatttgtatttgctaatgt |
156 |
Q |
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| T |
1716485 |
gtgagtagaactat-aagttttgaaataacctaaagtaaacagttaagagtttcaacttcatatggaaaataaggtgaacttatttttatctgctaatgt |
1716583 |
T |
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| Q |
157 |
attgaaatacagtcattttgatgagcatggcaatcaagccaaatgggtggaagatgtcaatgatacactactagatctacatacttccattcatgaaatt |
256 |
Q |
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| T |
1716584 |
attgaaatagagtcgttttgatgagcatagaactcaagtcaaacgagcgtaagatgtcaagggtacactactagatctacatattgtcattcatgaaatt |
1716683 |
T |
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| Q |
257 |
accaatgactcatttctaaaagaaagctcctttta-ttatttttgtttagt------------ttgacttacataaccaacatgagtgcacttattttat |
343 |
Q |
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| T |
1716684 |
atcattgactcatttctgaaataaagctccttttatttatttttgtatagttattattatagcttgccttacataaccaacatgattgcactttttattt |
1716783 |
T |
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| Q |
344 |
tttttacaaacatgagtgcacttgaaacttcaacggcattatttta |
389 |
Q |
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| T |
1716784 |
ttttttaaaacatgagtgcacttgaaacttcaacgacattatttta |
1716829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1737918 - 1738009
Alignment:
| Q |
1 |
aatattttcttgactggttattttacttaagaaatttgcactagtgtttagcagggagtgagtagaactattaagttttgaaataacctaaa |
92 |
Q |
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| T |
1737918 |
aatattttcttgactggttattttacttaagaaatttgcactagtgtttagcagggagttagtagaactattaagttttgaaataacctaaa |
1738009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 33577656 - 33577697
Alignment:
| Q |
120 |
tgggaaataaggtgaatttatttgtatttgctaatgtattga |
161 |
Q |
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| T |
33577656 |
tgggaaataaggtgattttagttttatttgctaatgtattga |
33577697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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