View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20908_low_5 (Length: 412)
Name: NF20908_low_5
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20908_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 34460951 - 34461348
Alignment:
| Q |
1 |
ttcgtgattcgtgtttgaagttagaagaggggtttgagtttc------tgtgttgtttggttcctctgttcgtatttggagattcgtcattttattcggt |
94 |
Q |
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| T |
34460951 |
ttcgtgattcgtgtttgaagttagaagaggggtttgagtttcagtttctgtgttgtttggttcctctgttcgtatttggagattcgtcatttttttcggt |
34461050 |
T |
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| Q |
95 |
atattgatcaaatagtatttgagtgaaagcaaaggttaggacttgggataatttgtgagattgctgaaatacgaagcacagtggtttggttt-------- |
186 |
Q |
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| T |
34461051 |
atattgatcaaatagtatttgagtgaaagcaaaggttaggacttaggataatttgtgagattgctgaaatacgaagcacagtggtttggttttggttttg |
34461150 |
T |
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| Q |
187 |
----gaaattgaaatatg----aaagttggtgggtggtggtggtgtaggaaattggacatttattttt-gcctgtcattggatttcatataatttaataa |
277 |
Q |
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| T |
34461151 |
gtttgaaattgaaatatgtatgaaagttggtgggtggtggtg---tgggaaattggacatttattttttgcctgtcattggatttcatataatt-aataa |
34461246 |
T |
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| Q |
278 |
taatactgaggttacttgacattgcccgtgtaaagaggcaagataatgtcccttcctttaaaacacaaataaaaaatgaatatgattcctgcctctgcct |
377 |
Q |
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| T |
34461247 |
taatactgaggttacttgacattgcccgtgtaaagaggcaagataatgtcccttcctttaaaacacaaaacaaaaatgaatatgattcctgcctctgcct |
34461346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 34461361 - 34461392
Alignment:
| Q |
374 |
gcctctctcaaaagtaaatctgattcatctca |
405 |
Q |
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| T |
34461361 |
gcctctctcaaaagtaaatctgattcatctca |
34461392 |
T |
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