View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20908_low_7 (Length: 376)
Name: NF20908_low_7
Description: NF20908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20908_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 26320229 - 26319877
Alignment:
| Q |
14 |
aaaataacatttcaaacatggacatgacaatttaacaataattaaaaccttaattaattaacctatcttaggatattacatgcacaaccacactactgaa |
113 |
Q |
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| T |
26320229 |
aaaataacatttcaaacatggacatgacaatttgacaataattgaaaccttaattaattaacctatcttaggatattacatgcacaaccacactactgaa |
26320130 |
T |
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| Q |
114 |
aatcaagtcatcaacctctaaattgatggatttcttctgaatgtgcactcacttgaagatgtagtagcatctggttcactagaagatgaagttgcttgag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26320129 |
aatcaagtcatcaacctctaaattgatggatttcttctgaatgtgcactcacttgaagatgtagtagcatctggttcactagaagatgaagttgcctgag |
26320030 |
T |
|
| Q |
214 |
ttagttccctaagttgtgaatgcatgttgtttatgaaagccattgaattctgttgtggttccttcattgcttcttttagcttactaagtgccaaacaata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26320029 |
ttagttccctaagttgtgaatgcatgttgtttatgaaagccattgaattctgttgtggttccttcattgcttcttttagcttactaagtgccaaacaata |
26319930 |
T |
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| Q |
314 |
tgcttcctgcatgtattggtttaataatattcatgagattaattttgattcat |
366 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26319929 |
tgcttcctgcatatattggtttaataatattcatgagattaattttgattcat |
26319877 |
T |
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