View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_high_14 (Length: 369)
Name: NF20909_high_14
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 7462394 - 7462507
Alignment:
| Q |
1 |
atgttgattttatttttgttgtaatgttgtaaacactattaaagtcttcatcttgcactccttgtgcgagatagacttgtttggttttggtagtatattt |
100 |
Q |
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| T |
7462394 |
atgttgattttatttttgttgtaatgttgtaaacactattaaagtcttcatcttgcactccttgtgcgagatagatttgtttggtttcggtagtatattt |
7462493 |
T |
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| Q |
101 |
cattttgccttctt |
114 |
Q |
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| T |
7462494 |
cattttgccttctt |
7462507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 150 - 297
Target Start/End: Original strand, 7462654 - 7462801
Alignment:
| Q |
150 |
ggtgacattttcgcatctgtcaagtaaggatctttannnnnnnncttgttttc-attgatttccttcaacgaaggtgattcatccaattatactctctcg |
248 |
Q |
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|||||||||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7462654 |
ggtgacatttccgcatctgtcaagtaaggatctt-aatttttttcttgttttttattgatttccttcaacgaaggtgattcatccaattatactctctcg |
7462752 |
T |
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| Q |
249 |
atcgagattctaactttattcaacccatttgctagatccaacttctgtc |
297 |
Q |
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| T |
7462753 |
atcgagattctaactttattcaacccatttgctagatccaacttctgtc |
7462801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 7462230 - 7462180
Alignment:
| Q |
303 |
tcctcctcatattgaaacgtcgcttatttctttcctcttatatgacccaaa |
353 |
Q |
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| T |
7462230 |
tcctcctcatattgaaacgtcgcttatttctttcctcttatatgacccaaa |
7462180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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