View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_high_21 (Length: 262)
Name: NF20909_high_21
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 33956485 - 33956731
Alignment:
| Q |
17 |
accactaactgaattatttgtaataataattgaacaatacagtaccactaaaccaagggtattcataataccagctggtactattaaaggtttcatattc |
116 |
Q |
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| T |
33956485 |
accactaactgaattatctgtaataataattgaacaatacagtaccactaaacaaagggtattcataataccagctggtactattaaaggtttcatattc |
33956584 |
T |
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| Q |
117 |
atcatgtagtagtagtactagtagcagttgcagcagcaggaattnnnnnnnngagctagaaaatttag----atatggactg-taaagtcacatgctaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
33956585 |
atcatgtagtagtagtactagtagcagttgcagcagcaggaattaaagaaaagagctagaaaatttagatatatatggactgctaaagtcacatgctaag |
33956684 |
T |
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| Q |
212 |
tatataaatagaatgtgctaaagaacagtgcaatgttaacatcatat |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33956685 |
tatataaatagaatgtgctaaagaacagtgcaatgttaacatcatat |
33956731 |
T |
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