View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_high_24 (Length: 250)
Name: NF20909_high_24
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 29056597 - 29056788
Alignment:
| Q |
1 |
agagcactagcatggaagcatatgtacgtcgtacatttttgaaattagtacaagccttttgttccctttacatccttttctttacagcagagataggtgg |
100 |
Q |
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| T |
29056597 |
agagcactagcatggaagcatatgtacgtcgtacatttttgaaattagtacaagccttttgttccctttacatccttttctttacagcagagataggtgg |
29056696 |
T |
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| Q |
101 |
taccattgttcaattatccgaaatcacaaaaacttcaatgcatcctctggccatcatgagagccagttatgaaaagtaataaccttttgaagg |
193 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29056697 |
taccattgttcaattatccgaaattac-aaaacttcaatgcatcctctggccatcatgagagccagttatgaaaagtaataaccttttgaagg |
29056788 |
T |
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