View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_high_5 (Length: 513)
Name: NF20909_high_5
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Original strand, 27268607 - 27269096
Alignment:
| Q |
8 |
taggaatgatcaagaagatgtcttaagcaacaatattgttatcaatgtgacatttgaaactagggttgaaacaaccggggaatcaagcgatgaatcgaat |
107 |
Q |
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| T |
27268607 |
taggaatgatcaagaagatgtcttaagcaacaatattgttatcaatgtgacatttgaaactagggttgaaacaaccggggaatcaagcgatgaatcgaat |
27268706 |
T |
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| Q |
108 |
tacaaggagcaaataatcgatgatccaacggttacaaatgatgagatacaaattgagatgggttcggtttcaactgaacctggaagctatcatcaaatta |
207 |
Q |
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| T |
27268707 |
tacaaggagcaaataatcgatgatccaacggttacgaatgatgagatacaaattgagatgggtttggtttcaactgaacctggaagctatcatcaaatta |
27268806 |
T |
|
| Q |
208 |
gtccttggaagcttattactgnnnnnnntagcaaatcaacacgtcgttctccaattgaagagcgtttacacgtaaagccaatagctatgaaaaagttttt |
307 |
Q |
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| T |
27268807 |
gtccttggaagcttattactgaaaaaaatagcaaatcaacacgtcgttctccaattgaagagcgtttacacgtaaagccaatagctatgaaaaagttttt |
27268906 |
T |
|
| Q |
308 |
ccctttacaccaaagaaagggttttnnnnnnngatacgtgactgcagtttggagcacaacgtcatag-nnnnnnnnncatgtctttatagatgaaacact |
406 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27268907 |
ccctttacaccaaagaaagggttttaaaaaaagatacgtgactgcagtttggagcacaacgtcatagttttttttttcatgtctttatagatgaaacact |
27269006 |
T |
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| Q |
407 |
atagcaattccaagaattgtgaattctctgcaacttcaagaatagtggttcaaaacttgggattattattacatatatgagaggttccact |
497 |
Q |
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| T |
27269007 |
atagcaattccaagaattgtgaattctctgcaacttcaagaatagtggttcaaaactt-ggattattattaaatatatgagaggttccact |
27269096 |
T |
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