View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_high_9 (Length: 422)
Name: NF20909_high_9
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 15096387 - 15096787
Alignment:
| Q |
1 |
ttaacaacttttactggttaacattattgatcgaataattaacaggagataaccaaaatgaaatactcataacatcacatagtactatcgaaagcgacat |
100 |
Q |
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||||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15096387 |
ttaacaacttttagtggtgaacattattgaccgaataattaacatgagataaccaaaatga--tactcataacatcacatagtactatcgaaagcgacat |
15096484 |
T |
|
| Q |
101 |
gcaattgcaaagtgaggaccatttaagatgtttactaccaaataaaacgttgtaatgtgtgacatgacatgttttctttgcatactgtagttgtagtgtt |
200 |
Q |
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| T |
15096485 |
gcaattgcaaagtgaggactatttaagatgtttactaccaaataaaacgttgtaatgtgtgacatgacatgtttcctttgcatactgtagttgtagtgtt |
15096584 |
T |
|
| Q |
201 |
acgtggctcatcatgtgaactgtgaagtttaaagtttcggttcagttccaagctatttatagcatttgcattgcagtgacaatctttatctaacaacaaa |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15096585 |
acgtggctcctcatgtgaactgtgaagtttaaagtttcggttcagttccaagctatttatagcatttgcattgcagtgacaatctttatctaacaacaaa |
15096684 |
T |
|
| Q |
301 |
agataaaagatagaacaagaaagaattataatgagtgttgcagcttcaaaatctgtaacagaatcagcaacacctgaagctaaagtttcaggcattttca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15096685 |
agataaaagatagaacaagaaagaattataatgagtgttgcagcttcaaaatctgtaacagaatcagcaacacctgaagctaaagtttcaggcattttca |
15096784 |
T |
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| Q |
401 |
tat |
403 |
Q |
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| T |
15096785 |
tat |
15096787 |
T |
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