View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_low_11 (Length: 421)
Name: NF20909_low_11
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 5 - 404
Target Start/End: Original strand, 43829731 - 43830128
Alignment:
| Q |
5 |
ttaagacactttataaaatataaaagagaactgaacttactaaactactagtaaggaaaacaaatagtctggtttactttctaagtatatttttatgttt |
104 |
Q |
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| T |
43829731 |
ttaagacactttataaaacataaaagagaactgaacttagtaaactactagtaaggaaaacaaatattctggtttactttctaactatatttttatgttt |
43829830 |
T |
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| Q |
105 |
cattttaactttatatagtctacttttgaaatgacatttggctatggattttataagtaagtttgatatgctatacactaagaaccaaaaaagtgttaca |
204 |
Q |
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| T |
43829831 |
cattttaactttatgtagtctacttttgaaatgacatttggctatggattttataagtaagtttgatatgctatacactaagaaccaaaaaagtgttaca |
43829930 |
T |
|
| Q |
205 |
taaaaggtttgaagtacctgaatttcagaaagtatgcatccatgcatggccataaccataaacgcgcaatacctaagagcctcacttactttgacataat |
304 |
Q |
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| T |
43829931 |
taaaaggtttgaagtacctgaatttcagaaagtatgcatccatgcatggccataaccacaaacgcgcaatacctaagagcctcgcttactttgacataat |
43830030 |
T |
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| Q |
305 |
tcttccatggatatttaagcattttgtatttaccatgaggtggttcccatacagcaaatcccaactacaatcacaaacacatatgggaatgagctattaa |
404 |
Q |
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| T |
43830031 |
tcttccatggatatttaagcattttgtatttaccatgaggtggttcccatacagcaaatcccaactacaatcacaaacac--atgggaatgagctattaa |
43830128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 215 - 386
Target Start/End: Original strand, 43822359 - 43822530
Alignment:
| Q |
215 |
gaagtacctgaatttcagaaagtatgcatccatgcatggccataaccataaacgcgcaatacctaagagcctcacttactttgacataattcttccatgg |
314 |
Q |
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| T |
43822359 |
gaagtacctgaatttcagaaagtatgcatccatgcatggccatgaccatgaatgcacaatgtcttagagccccacttactttgacataattcttccatgg |
43822458 |
T |
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| Q |
315 |
atatttaagcattttgtatttaccatgaggtggttcccatacagcaaatcccaactacaatcacaaacacat |
386 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43822459 |
atagttaagcattttgtatttaccatgaggtggttcccatacagcaaatcccaactacaatcacaaaaacat |
43822530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 216 - 384
Target Start/End: Original strand, 43815160 - 43815328
Alignment:
| Q |
216 |
aagtacctgaatttcagaaagtatgcatccatgcatggccataaccataaacgcgcaatacctaagagcctcacttactttgacataattcttccatgga |
315 |
Q |
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| T |
43815160 |
aagtacctgtatttcagaaagtatgcatccatgcatggccatgaccataaatgcgcaatgtcttagagccccacttactttcacataattcttccatgga |
43815259 |
T |
|
| Q |
316 |
tatttaagcattttgtatttaccatgaggtggttcccatacagcaaatcccaactacaatcacaaacac |
384 |
Q |
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| T |
43815260 |
tatttaagacttctgtagtgaccatgaggtggttcccagacagcaaatcccaacttcaatcaccaacac |
43815328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 216 - 362
Target Start/End: Complemental strand, 31808501 - 31808355
Alignment:
| Q |
216 |
aagtacctgaatttcagaaagtatgcatccatgcatggccataaccataaacgcgcaatacctaagagcctcacttactttgacataattcttccatgga |
315 |
Q |
| |
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||||||||| |||||||||||||| ||||||||||| ||||| |||||||| || |||| ||| || || |||||||||| |||||||| ||||||||| |
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| T |
31808501 |
aagtacctgtatttcagaaagtatacatccatgcatagccatcaccataaatgcacaatgcctgagtgctccacttactttaacataatttttccatgga |
31808402 |
T |
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| Q |
316 |
tatttaagcattttgtatttaccatgaggtggttcccatacagcaaa |
362 |
Q |
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||| ||| ||||||||| |||||||||||| ||||| | |||||| |
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| T |
31808401 |
tatctaaacattttgtaacgaccatgaggtggctcccaaatagcaaa |
31808355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 50244672 - 50244626
Alignment:
| Q |
217 |
agtacctgaatttcagaaagtatgcatccatgcatggccataaccat |
263 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||||| ||||| |
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| T |
50244672 |
agtacctgtatttctgaaagtatgcatccatgcattgccatgaccat |
50244626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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