View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_low_13 (Length: 403)
Name: NF20909_low_13
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 33643462 - 33643845
Alignment:
| Q |
1 |
aaatgtaatgaaactttaattttgactttgacaccacactacatgtgccttttacatatagtttatatgacaagtaatgacaatcatgctctattataag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643462 |
aaatgtaatgaaactttaattttgactttgacaccacactacatgtgccttttacatatagtttatatgacaagtaatgacaatcatgctctattataag |
33643561 |
T |
|
| Q |
101 |
gtgactcttagctctaaccaaaggacaatggagttgagaaagaaactcttgcttacttgtaaggtccacacttcttcactcacctcctttcaaattcatc |
200 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33643562 |
gtgacccttagctctaaccaaaggacgatggagttgagaaagaaactcttgcttacttgtaaggtccacacttcttcactcacctcctctcaaattcatc |
33643661 |
T |
|
| Q |
201 |
ctacaaaaatgtccaaacttctctttctcacaatcacaaactcattc--cacacactctcttctccaaaaatgtcttccttctcagtacgtttcctcact |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643662 |
ctacaaaaatgtccaaacttctctttctcacaatcacaaactcattccacacacactctcttctccaaaaatgtcttccttctcagtacgtttcctcact |
33643761 |
T |
|
| Q |
299 |
ccaccatccatcactcgtccaaaaacatggctactatctgctgcaactccatcagttgcacctgtttcaacaccacaagttgat |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643762 |
ccaccatccatcactcgtccaaaaacatggctactatctgctgcaactccatcagttgcacctgtttcaacaccacaagttgat |
33643845 |
T |
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