View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_low_14 (Length: 395)
Name: NF20909_low_14
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 31741376 - 31741008
Alignment:
| Q |
18 |
catctaataaggaaatagtcatttgattggatgaactgcaatccttctgatttgtctttaaatttgattcggttgaaacatttccagaaataaagccagg |
117 |
Q |
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| T |
31741376 |
catctaataaggaaatagtcatttgattggatgaactgcaatccttctgatttgtctttaaatttgattcggttgaaacatttccagaaataaagccagg |
31741277 |
T |
|
| Q |
118 |
ttctttaggctctcctaattccatctcagtactccctaacataagaatcacagtggccatagtaggcctatcttcaggattctgttgtacacacaagaga |
217 |
Q |
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| T |
31741276 |
ttctttaggctctcctaattccatctcagtactccctaacataagaatcagagtggccatagtaggcctatcttcaggattctgttgtacacacaagaga |
31741177 |
T |
|
| Q |
218 |
ctgacgtgcatacaacgcaacacttctgatataatgagcgtctcacctatgtttgagtcaatcaaatccaaagctttgtcctctttccacactacccatg |
317 |
Q |
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| T |
31741176 |
ctgacgtgcatacaacgcaacacttctgatataatgagcgtctcacctatgtttgagtcaatcaaatccaaagctttgtcctctttccacactacccatg |
31741077 |
T |
|
| Q |
318 |
cctgaataatgtaagaagtcgatatctattatttgttatgtttgaaattgttaattgacatatattctt |
386 |
Q |
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| T |
31741076 |
cctgaataatgtaagaagtcgatatatattatttgttatgtttgaaattgttaattgacatatattctt |
31741008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 104 - 378
Target Start/End: Complemental strand, 31746635 - 31746360
Alignment:
| Q |
104 |
gaaataaagccaggttctttaggctctcctaattccatctcagtact---ccctaacataagaatcacagtggccatagtaggcctatcttcaggattct |
200 |
Q |
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| T |
31746635 |
gaaatgaaaccaggttcttcaggctcccttagttccatctcagtactactccccaacattagaatcacagacgacatggtaggcctatcttcaggattct |
31746536 |
T |
|
| Q |
201 |
gttgtacacacaagagactgacgtgcatacaacgcaacacttctgatataatgagcgtctcacctatgtttgagtcaatcaaatccaaagctttgtcctc |
300 |
Q |
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| ||| ||||||||||||| || ||||||||||||||||||||||||| || | ||||||||||| ||||||||| ||||| || ||||| | || || |
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| T |
31746535 |
gctgtgcacacaagagactaacatgcatacaacgcaacacttctgatacaacgtacgtctcacctaagtttgagtcgatcaactctaaagccctctcttc |
31746436 |
T |
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| Q |
301 |
tttccacactacccatgcctgaataatgtaagaagtcgatatctattatttgttatgtttgaaattgttaattgacat |
378 |
Q |
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| T |
31746435 |
tttccacaatgcccatgcctgaatcatacgagaagttgata--tattatttgttatgtttgaaatagttaattgacat |
31746360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 78 - 342
Target Start/End: Complemental strand, 31733757 - 31733493
Alignment:
| Q |
78 |
aatttgattcggttgaaacatttccagaaataaagccaggttctttaggctctcctaattccatctcagtactccctaacataagaatcacagtggccat |
177 |
Q |
| |
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|||||| ||| | |||||||||| ||||| || |||||||||||||| |||||||||||| |||||| |||||| ||||| ||||| |||| ||||| |
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| T |
31733757 |
aatttgtttcagatgaaacatttttggaaatgaaaccaggttctttaggttctcctaattccttctcagaactccccaacattagaattacagaagccat |
31733658 |
T |
|
| Q |
178 |
agtaggcctatcttcaggattctgttgtacacacaagagactgacgtgcatacaacgcaacacttctgatataatgagcgtctcacctatgtttgagtca |
277 |
Q |
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|| |||||||||||||||||||| |||||||||| |||||| | ||||||||||||||| |||||||||| || ||||||| | ||||||||||| |
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| T |
31733657 |
ggtcggcctatcttcaggattctgctgtacacacaggagactaatgtgcatacaacgcaatacttctgatacaacatacgtctcatcaatgtttgagtcg |
31733558 |
T |
|
| Q |
278 |
atcaaatccaaagctttgtcctctttccacactacccatgcctgaataatgtaagaagtcgatat |
342 |
Q |
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||||| | ||||| |||||||||||||| || ||||||||| ||| || ||||| || ||||| |
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| T |
31733557 |
gtcaaacctaaagccctgtcctctttccacgctgcccatgcctaaatcatataagaggttgatat |
31733493 |
T |
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