View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_low_15 (Length: 391)
Name: NF20909_low_15
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 377
Target Start/End: Complemental strand, 37941650 - 37941287
Alignment:
| Q |
14 |
caacatgcacagccaaaaccaagctttcacctttcgaacaattcatgatcaaacaccacaaaagccactgcaaaagtaccctcttggttattcttctgct |
113 |
Q |
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| T |
37941650 |
caacatgcacagccaaaaccaagctttcacctttcgaacaattcatgatcaaacaccacaaaagccactgcaaaagtaccctcttggttattcttcagct |
37941551 |
T |
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| Q |
114 |
cttgtctcaaaaacacaagtaccatctttggaaattccgccaagtactgattctcatctcaaaatgggtaatgtcttggaggaattaggaatattgaggc |
213 |
Q |
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| T |
37941550 |
cttgtctcaaaaacacaagtaccatctttggaaattccgccaagtactgattctcatctcaaaatgggtaatgtcttggaggaattaggaatattgaggc |
37941451 |
T |
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| Q |
214 |
atgatgatcgtgttaacttgatgagtagtaacaatggttcaaaagaatgggcccgaagaactcatcatgacaccattaacaacaatgattcatgtgatca |
313 |
Q |
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| T |
37941450 |
atgatgatcgtgttaacttgatgagtagtaacaatggttcaaaagaatgggcccgaagaactcatcatgacaccattaacaacaatgattcatgtgatca |
37941351 |
T |
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| Q |
314 |
tatggattaattaattgtttaatttcataagtgtattttgtaaagcaactgatgctagtataat |
377 |
Q |
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| T |
37941350 |
tatggattaattaattgtttaatttcataagtgtaatttgtaaagcaactgatgctagtataat |
37941287 |
T |
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