View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_low_2 (Length: 557)
Name: NF20909_low_2
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 17 - 550
Target Start/End: Original strand, 16426595 - 16427128
Alignment:
| Q |
17 |
tatagttgattaatttcactatagtatcaaaccattcatggaatatttcaccaaatcaaagatcattaagctcaaaagccaccaagataagtaccttatc |
116 |
Q |
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| T |
16426595 |
tatagttgattaatttcactatagtatcaaaccattcatggaatatttcaccaaatcaaagatcattaagctcaaaagccaccaagataagtaccttatc |
16426694 |
T |
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| Q |
117 |
gccgacgacaacaatggaaaagtccgtcaaagccgaaacggagccattaaaagagctcaatggacagtggagataattcaaaaactacaaactcatcacc |
216 |
Q |
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| T |
16426695 |
gccgacgacaacaacggaaaagtccgtcaaagccgaaacggagccattaaaagagctcaatggacagtggagataattcaaaaactacaaactcatcacc |
16426794 |
T |
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| Q |
217 |
acgtaataaggttgaagagccacaatggaaaatatttaacggcaacagaaacaccgtatcccttaaccctaacaggaaaaagggtaatattaacggagtt |
316 |
Q |
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| T |
16426795 |
acgtaataaggttgaagagccacaacggaaaatatttaacgtcaacagaaacaccgtatcccttaaccctaacaggaaaaagggtaatattaacggagtt |
16426894 |
T |
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| Q |
317 |
agaaaacggtgtagatggtaaaaacgaatggcaaccaatacgtgacgggtttcaggtaaagctgaggagttgttgtgggaggtttttgaagggaaacggt |
416 |
Q |
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| T |
16426895 |
agaaaacggtgtagatggtaaaaacgaatggcaaccaatacgtgacgggtttcaggtaaagctgaggagttgttgtgggaggtttttgaagggaaacggt |
16426994 |
T |
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| Q |
417 |
agtaatccgccgtggaggaacagtgtaacgattgatgattcgtttgtgaaaatggacggtgttttgtgggatgttgaaggtgttatggaagatgagtttg |
516 |
Q |
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| T |
16426995 |
agtaatccgccgtggaggaacagtgtaacgattgatgattcgtttgtgaaaatggacggtgttttgtgggatgttgaaggtgttatggaagatgagtttg |
16427094 |
T |
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| Q |
517 |
agaatttgttatcttcttttggttctgatgatgt |
550 |
Q |
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| T |
16427095 |
agaatttgttatcttcttttggttcagatgatgt |
16427128 |
T |
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