View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20909_low_21 (Length: 317)

Name: NF20909_low_21
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20909_low_21
NF20909_low_21
[»] chr1 (1 HSPs)
chr1 (42-317)||(36464737-36465017)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 42 - 317
Target Start/End: Complemental strand, 36465017 - 36464737
Alignment:
Q  42 atgtgggaaaatgaacaaaatcaaccaagcatgggagacataaattcactttgacttgtcattatggtacatttttgtagccgagaagcggaaaatataa 141  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36465017 atgtgggaaaatgaacaaaatcaaccaggcgtgggagacataaattcactttgacttgtcattatggtacatttttgtagccgagaagcggaaaatataa 36464918  T
Q  142 agtattctgcggttaagcttcgattgctcaattaaggaaggatatgccactactatgatgagagtagagacattcttggttaagagagtgagagttggag 241  Q
    ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464917 agtattctgcggttaagcttcgattgctcaatta----aggatatgccactactatgatgagagtagagacattcttggttaagagagtgagagttggag 36464822  T
Q  242 gagttagtgagagaatgtaaaagagcaacttgaggaataat---------atttttctatatatccttctacttctaattcataa 317  Q
    |||||||||||||||||| ||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  36464821 gagttagtgagagaatgtgaaagagcaacttgaggaataatatctcaaccatttttctatatatccttctacttctaattcataa 36464737  T

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