View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20909_low_23 (Length: 308)

Name: NF20909_low_23
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20909_low_23
NF20909_low_23
[»] chr5 (1 HSPs)
chr5 (147-240)||(32798365-32798455)
[»] chr2 (4 HSPs)
chr2 (147-240)||(45336618-45336708)
chr2 (144-227)||(14662651-14662731)
chr2 (243-308)||(14658540-14658605)
chr2 (17-63)||(14662430-14662476)
[»] chr8 (1 HSPs)
chr8 (147-240)||(44732202-44732292)
[»] chr7 (1 HSPs)
chr7 (144-240)||(13110845-13110939)
[»] chr3 (3 HSPs)
chr3 (28-63)||(48023999-48024034)
chr3 (28-65)||(48025108-48025145)
chr3 (28-65)||(48027288-48027325)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 32798365 - 32798455
Alignment:
Q  147 tggtatcaagagccccatattgatcttaacggggtctgtgaggttagaaaaccagtgtaaaattttgagggtgagagaaaaccagcaagaaaac 240  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  32798365 tggtatcaagagccccat--tgatcttaacggg-tctgtgaggttagaaaactagtgtaaaactttgagggtgagagaaaaccagcaagaaaac 32798455  T

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Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 45336618 - 45336708
Alignment:
Q  147 tggtatcaagagccccatattgatcttaacggggtctgtgaggttagaaaaccagtgtaaaattttgagggtgagagaaaaccagcaagaaaac 240  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  45336618 tggtatcaagagccccat--tgatcttaacggg-tctgtgaggttagaaaactagtgtaaaactttgagggtgagagaaaaccagcaagaaaac 45336708  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 14662651 - 14662731
Alignment:
Q  144 acatggtatcaagagccccatattgatcttaacggggtctgtgaggttagaaaaccagtgtaaaattttgagggtgagagaaaa 227  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||    
T  14662651 acatggtatcaagagccc--tattgatcttaacggg-tctatgaggttagaaaatcagtgtaaaattttgagggtgagagaaaa 14662731  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 14658540 - 14658605
Alignment:
Q  243 tgatttttctagaactcccaccatggtcggaatatcatgacaacatgttattattattttttcctt 308  Q
    |||||||||||||| | ||||| ||||| |||| |||||||| |||||||||||||||||||||||    
T  14658540 tgatttttctagaatttccaccgtggtcagaatttcatgacagcatgttattattattttttcctt 14658605  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 14662430 - 14662476
Alignment:
Q  17 aataatgaccggtgcttaagagtagatttcgtgcagattttatgttc 63  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||    
T  14662430 aataatgactagtgcttaagagtagatttcgtgcagatcttatgttc 14662476  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 44732202 - 44732292
Alignment:
Q  147 tggtatcaagagccccatattgatcttaacggggtctgtgaggttagaaaaccagtgtaaaattttgagggtgagagaaaaccagcaagaaaac 240  Q
    ||||||||||||||||||  ||||||||||||| ||||||||| |||||||| ||| || || |||||||||||||||||||||||||||||||    
T  44732202 tggtatcaagagccccat--tgatcttaacggg-tctgtgagggtagaaaactagtatagaactttgagggtgagagaaaaccagcaagaaaac 44732292  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 13110939 - 13110845
Alignment:
Q  144 acatggtatcaagagccccatattgatcttaacggggtctgtgaggttagaaaaccagtgtaaaat-tttgagggtgagagaaaaccagcaagaaaac 240  Q
    ||||||||||||||| ||  ||||||||||||| |  |||||||| ||||||||| |||||||||  ||| |||||||||||||||||||||||||||    
T  13110939 acatggtatcaagagtcc--tattgatcttaactga-tctgtgagattagaaaactagtgtaaaaaattttagggtgagagaaaaccagcaagaaaac 13110845  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 48024034 - 48023999
Alignment:
Q  28 gtgcttaagagtagatttcgtgcagattttatgttc 63  Q
    |||||||||||||||||| |||||||||||||||||    
T  48024034 gtgcttaagagtagatttagtgcagattttatgttc 48023999  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 48025145 - 48025108
Alignment:
Q  28 gtgcttaagagtagatttcgtgcagattttatgttcct 65  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  48025145 gtgcttaagagtagatttagtgtagattttatgttcct 48025108  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 48027325 - 48027288
Alignment:
Q  28 gtgcttaagagtagatttcgtgcagattttatgttcct 65  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  48027325 gtgcttaagagtagatttagtgtagattttatgttcct 48027288  T

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