View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_low_25 (Length: 270)
Name: NF20909_low_25
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_low_25 |
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| [»] scaffold0542 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 5725306 - 5725540
Alignment:
| Q |
16 |
atggtgagaactaggtggtttttgccaacacaaagcacccttcaacatcatgatacacatgccgataccaaccttattatcagtagaggagaaagatgca |
115 |
Q |
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| T |
5725306 |
atggcgagaactaggtcgtttttgccaacacaaagcacccttcaacatcatgatacacatgccgataccaaccttattatcagtagaggaaaaagatgca |
5725405 |
T |
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| Q |
116 |
tcaacactacatttaaattcacttgtgcgggtcgctgtcttcgtgcgctgtgaatattgctcgatcttggtgaaacagcggtagttgttgttcttgcggt |
215 |
Q |
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| T |
5725406 |
tcaacactacatttaaatccacttgtgcgggtcgctgtcttcgtgcgctgtgaatattgctcaatcttggtgaaacagcggtagttgttgttcttgcggt |
5725505 |
T |
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| Q |
216 |
tcaacgcaactcttgtgcaagctttcagtcttctaac |
252 |
Q |
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| T |
5725506 |
tcagcgcaactc--atgcaagctttcagtcttctaac |
5725540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 5279086 - 5279307
Alignment:
| Q |
30 |
gtggtttttgccaacacaaagcacccttcaacatcatg-atacacatgccgatacca-----accttattatcagtagaggagaaagatgcatcaacact |
123 |
Q |
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| T |
5279086 |
gtggtttttcctaacacaaagcacccttcaacatcatgaatacacatgatgataccaatcttatcttattaccaggaaaggagaatgatacatccacatt |
5279185 |
T |
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| Q |
124 |
acatttaaat-tcacttgtgcgggtcgctgtcttcgtgcgctgtgaatattgctcgatcttggtgaaacagcggtagttgttgttcttgcggttcaacgc |
222 |
Q |
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| T |
5279186 |
acatttaaatctaactggagtgggtttctgtcatcgtgcactgttagtatttatcgggcctggtggagaagtggtagttgttgtttttgcggttctgcgc |
5279285 |
T |
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| Q |
223 |
aactcttgtgcaagctttcagt |
244 |
Q |
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| T |
5279286 |
aactcttatacaagcttccagt |
5279307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 13773259 - 13773206
Alignment:
| Q |
80 |
ataccaaccttattatcagtagaggagaaagatgcatcaacactacatttaaat |
133 |
Q |
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| T |
13773259 |
ataccaaccttattatcagaggaagagaatgatgcatcaacattacatttaaat |
13773206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0542 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0542
Description:
Target: scaffold0542; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 10881 - 10956
Alignment:
| Q |
16 |
atggtgagaactaggtggtttttgccaacacaaagcacccttcaacatcatg-atacacatgccgataccaacctt |
90 |
Q |
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| T |
10881 |
atggggagagctaggttgtttttgctaacgcaaagcacccttcagcatcacgaatacacatgttgataccaacctt |
10956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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