View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_low_27 (Length: 258)
Name: NF20909_low_27
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_low_27 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 42091806 - 42092046
Alignment:
| Q |
18 |
gatccaagaaccagccaaaatcctgtaaaaattcttcaaaaacagcccaaaccatcaacaagataaactttcccgttcctcttttccacagctacctcga |
117 |
Q |
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| T |
42091806 |
gatccaagaaccagccaaaatcctgtaaaaattcttcaaaa-cagcccaa-ccatcatcaaaataaactttcccgttcctcttttccacagctacctcaa |
42091903 |
T |
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| Q |
118 |
tctcattctggtttggatcacgcaatatcacaaaaggaccaacttgcaaaccaaaccctcttgcaaagcacacaggcagcctacc--ctcgctatacaaa |
215 |
Q |
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| T |
42091904 |
tctcattctggtttggatcacgcaatatcacaaaaggaccaacttgcaaaccaaaccctcttgcaaagcatgcaggcagcctaccctctcgctatacaaa |
42092003 |
T |
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| Q |
216 |
catatgttcatgatcaaataagttagtattgtacaaaataaac |
258 |
Q |
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| T |
42092004 |
catatgttcatgatcaaataagttagtattgtacaaaataaac |
42092046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 184
Target Start/End: Complemental strand, 31949246 - 31949128
Alignment:
| Q |
67 |
aaccatcaacaagataaactttcccgttcctcttttccac-agctacctcgatctcattctggtttggatcacgcaatatcacaaaaggaccaacttgca |
165 |
Q |
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| T |
31949246 |
aaccatcagtaaaataaaccctcccgttcttctttttcaatagctaccttaacctcattctggttcggatcacgtaacaacacaaacgaagcaacttgta |
31949147 |
T |
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| Q |
166 |
aaccaaaccctcttgcaaa |
184 |
Q |
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| T |
31949146 |
gaccaaaccctcttgcaaa |
31949128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 27592781 - 27592542
Alignment:
| Q |
20 |
tccaagaaccagccaaaatcctgtaaaaattcttcaaaaacagcccaaaccatcaacaagataaactttcccgttcctc-ttttccacagctacctcgat |
118 |
Q |
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| T |
27592781 |
tccaagaaccaaccaaaatcccgcaaaaattcttcaaaa-cagcccaa-ctgtcaacaaaatcaactttcccatgcctcattttccacaactaactcaat |
27592684 |
T |
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| Q |
119 |
ctcattctggtttggatcacgcaatatcacaaaaggaccaacttgcaaaccaaaccctcttgcaaagcacacaggcagcctaccctcgctata--caaac |
216 |
Q |
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| T |
27592683 |
ctcattttgttttggatcacgcaatatcacaagaggagaagcttgaaaaccaaaccctcttgcatagaattcatgcagccttccctcactatatgaaaac |
27592584 |
T |
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| Q |
217 |
atatgttcatgatcaaataagttagtattgtacaaaataaac |
258 |
Q |
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| T |
27592583 |
aattgtttatgatcaaatatgttagtattgtaaaaaataaac |
27592542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 23342309 - 23342438
Alignment:
| Q |
67 |
aaccatcaacaagataaactttcccgttcctcttttccacagctacctcgatctcattctggtttggatcacgcaatatcacaaaaggaccaacttgcaa |
166 |
Q |
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| T |
23342309 |
aaccatcagcaaaataaactttcccactcttcttctcgattgcaacctcgatctcattctggttttgatcacgcaacatagcatatggccctacctgtaa |
23342408 |
T |
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| Q |
167 |
accaaaccctcttgcaaagcacacaggcag |
196 |
Q |
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| T |
23342409 |
accaaaagctcttgcaaagcaagcaggcag |
23342438 |
T |
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