View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_low_3 (Length: 541)
Name: NF20909_low_3
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 54388677 - 54388318
Alignment:
| Q |
19 |
taaagcattatgcaacattaatgtggttgacttaatattgaagtagttctagagaggaaaacaaaataactaaagatgagatgtattacgtagaagaaac |
118 |
Q |
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| T |
54388677 |
taaagcattatgcaacattaatgtggttgacttaatattgaggtagttctagagaggaaaacaaaataactaaagatgagatgtattacgtagaagaaac |
54388578 |
T |
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| Q |
119 |
aattagtgtattgagaatgagagcacattaagtgaagtcgtattcaaggattcaacctttttaaagtgatcaatctatttagagtttaaagcgaataata |
218 |
Q |
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| T |
54388577 |
aattagtgtattgagaatgagagcacattaagggaagtcgtattcaaagattcaacctttttaaagtgatcaatctatttagagtttaaagcgaataata |
54388478 |
T |
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| Q |
219 |
tcagttattaatctataaatcaatagtttatatcatacaaaaatgcataactagttatattatcaaagaatcaaaacacagtttgatgcacatatattta |
318 |
Q |
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| T |
54388477 |
tcagttattaatctataaatcaatagtttatatcatacaaaaatgcataactagttatattatcaaagaatcaaaacacagtttgatgcacatagattaa |
54388378 |
T |
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| Q |
319 |
tgagatacgttaggaaaaaagtatacacagctgactatattaaataaaatatgcaccgag |
378 |
Q |
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| T |
54388377 |
tgagatactttaggaaaaaaatatacacagctaactagattaaataaaatatgcaccgag |
54388318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 459 - 535
Target Start/End: Complemental strand, 54388248 - 54388172
Alignment:
| Q |
459 |
ctcgtgaattttcatggaatgcaatgatttgatttcttataaagtataatcataaaacaactagtatttcatttctc |
535 |
Q |
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| T |
54388248 |
ctcgtgaattttcatggaatgcaatgatttgatttcttataaagtataatcataaaacaactagtatttcatttctc |
54388172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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