View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_low_32 (Length: 245)
Name: NF20909_low_32
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 35273912 - 35273686
Alignment:
| Q |
1 |
tgaggaggagcagagagagcagatactgtcccttgaaaaattgagcttctctttgaagattcatcagccttcaagcaatgtttaactctcattccagatt |
100 |
Q |
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| T |
35273912 |
tgagaaggatcagatagagcagatactgtcccttgaaaaattgagcttctctttgaagattcatcagtcttcaagcaatgtttaactctcattccagatt |
35273813 |
T |
|
| Q |
101 |
gccaattaatctgcattgctttctttacagcttcagcatccaccacaaaattacaccaatgactagccgtcggataataaataacttcaaaagtcatatt |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35273812 |
gccaattaatctgcattgctttctttacggcttcagcatccaccacaaaattacaccaatgactagccgtcggataataaataacttcaaaagtcatatt |
35273713 |
T |
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| Q |
201 |
cttatccgccaattctgctgcctccat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
35273712 |
cttatccgccaattctgctgcctccat |
35273686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 17976343 - 17976432
Alignment:
| Q |
136 |
gcatccaccacaaaattacaccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcctcc |
225 |
Q |
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||||| || ||||||||||||||| ||||||| |||||||| | ||||||||||| || ||||||||||||||||| |||||||| |
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| T |
17976343 |
gcatcaacaacaaaattacaccaacctttagccgttggataatacacaacttcaaaagccaagttcttatccgccaattccactgcctcc |
17976432 |
T |
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