View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20909_low_34 (Length: 240)

Name: NF20909_low_34
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20909_low_34
NF20909_low_34
[»] chr6 (13 HSPs)
chr6 (50-235)||(30496368-30496553)
chr6 (100-233)||(24163450-24163582)
chr6 (108-227)||(5606753-5606871)
chr6 (126-233)||(31894002-31894108)
chr6 (146-227)||(4748160-4748241)
chr6 (155-190)||(6142859-6142894)
chr6 (106-188)||(18289892-18289974)
chr6 (128-173)||(23954226-23954271)
chr6 (159-227)||(3718358-3718426)
chr6 (108-192)||(21453348-21453431)
chr6 (128-227)||(14590124-14590222)
chr6 (128-173)||(12101200-12101245)
chr6 (130-178)||(34516364-34516412)
[»] chr4 (33 HSPs)
chr4 (64-227)||(42236896-42237059)
chr4 (106-194)||(45043368-45043455)
chr4 (108-235)||(32157404-32157530)
chr4 (100-226)||(54041931-54042055)
chr4 (81-184)||(12865217-12865319)
chr4 (109-192)||(42150240-42150322)
chr4 (127-232)||(52632900-52633004)
chr4 (101-184)||(37370250-37370332)
chr4 (106-232)||(40414009-40414134)
chr4 (127-232)||(48316138-48316242)
chr4 (101-232)||(53401641-53401773)
chr4 (126-184)||(50373157-50373214)
chr4 (106-187)||(23254971-23255052)
chr4 (107-235)||(29696612-29696739)
chr4 (106-227)||(53298212-53298332)
chr4 (128-184)||(48684497-48684552)
chr4 (116-175)||(7986106-7986165)
chr4 (127-234)||(36569364-36569470)
chr4 (109-235)||(23752677-23752802)
chr4 (127-185)||(40413216-40413273)
chr4 (132-190)||(47631167-47631224)
chr4 (130-188)||(50500980-50501038)
chr4 (106-168)||(51333026-51333087)
chr4 (111-172)||(55290489-55290550)
chr4 (143-227)||(18910340-18910423)
chr4 (126-227)||(45072985-45073090)
chr4 (159-221)||(26416253-26416315)
chr4 (127-173)||(29696464-29696510)
chr4 (135-185)||(52607011-52607060)
chr4 (127-192)||(5573929-5573993)
chr4 (109-192)||(19600517-19600600)
chr4 (140-232)||(27301600-27301691)
chr4 (108-219)||(51923458-51923571)
[»] chr2 (13 HSPs)
chr2 (82-218)||(37660654-37660793)
chr2 (108-227)||(5185743-5185861)
chr2 (101-235)||(6150095-6150228)
chr2 (106-191)||(27892612-27892697)
chr2 (108-233)||(39730888-39731012)
chr2 (106-233)||(40772065-40772192)
chr2 (159-227)||(18061316-18061384)
chr2 (121-189)||(35048197-35048264)
chr2 (109-235)||(7136866-7136991)
chr2 (139-185)||(16803351-16803396)
chr2 (139-185)||(16842634-16842679)
chr2 (139-185)||(7293122-7293167)
chr2 (130-172)||(9367988-9368029)
[»] chr7 (23 HSPs)
chr7 (101-235)||(33698510-33698643)
chr7 (109-227)||(45463258-45463376)
chr7 (101-192)||(7345117-7345208)
chr7 (107-186)||(47421008-47421086)
chr7 (127-232)||(43988140-43988244)
chr7 (131-238)||(33800352-33800459)
chr7 (159-227)||(31205902-31205970)
chr7 (102-185)||(31553083-31553166)
chr7 (106-235)||(25102292-25102421)
chr7 (127-185)||(36250652-36250709)
chr7 (96-173)||(2366964-2367040)
chr7 (105-173)||(28132292-28132357)
chr7 (128-173)||(33055528-33055573)
chr7 (159-227)||(44184723-44184791)
chr7 (129-184)||(2735951-2736005)
chr7 (129-216)||(44623820-44623907)
chr7 (159-192)||(21271487-21271520)
chr7 (128-173)||(31011607-31011652)
chr7 (128-173)||(45223647-45223692)
chr7 (106-233)||(2735488-2735612)
chr7 (139-175)||(29005998-29006034)
chr7 (106-218)||(30854445-30854556)
chr7 (141-173)||(38477718-38477750)
[»] scaffold0069 (1 HSPs)
scaffold0069 (80-190)||(4168-4277)
[»] chr5 (11 HSPs)
chr5 (130-227)||(6231239-6231336)
chr5 (121-227)||(8166229-8166334)
chr5 (130-232)||(12005516-12005618)
chr5 (108-192)||(24781662-24781746)
chr5 (101-227)||(1199551-1199676)
chr5 (126-227)||(22963943-22964043)
chr5 (127-192)||(28613378-28613442)
chr5 (135-185)||(35206134-35206183)
chr5 (128-173)||(23153630-23153675)
chr5 (135-184)||(35210969-35211017)
chr5 (131-225)||(35112523-35112616)
[»] chr3 (17 HSPs)
chr3 (80-173)||(33863377-33863469)
chr3 (80-235)||(6955873-6956027)
chr3 (101-184)||(12406075-12406158)
chr3 (80-192)||(31301514-31301622)
chr3 (128-227)||(49032835-49032933)
chr3 (101-235)||(2032340-2032473)
chr3 (130-235)||(41055714-41055818)
chr3 (106-173)||(41054289-41054355)
chr3 (127-232)||(45973084-45973188)
chr3 (108-233)||(46970070-46970194)
chr3 (101-190)||(55006934-55007022)
chr3 (106-175)||(47498433-47498503)
chr3 (128-185)||(48647812-48647869)
chr3 (111-175)||(24828497-24828561)
chr3 (108-192)||(49952351-49952434)
chr3 (131-225)||(32263218-32263311)
chr3 (143-175)||(28850090-28850122)
[»] chr1 (19 HSPs)
chr1 (82-186)||(4861474-4861577)
chr1 (101-192)||(33775271-33775362)
chr1 (106-238)||(6222411-6222543)
chr1 (106-191)||(37071036-37071120)
chr1 (80-192)||(3936516-3936627)
chr1 (159-235)||(38459110-38459186)
chr1 (126-192)||(23174163-23174228)
chr1 (108-174)||(35395311-35395376)
chr1 (128-173)||(46121637-46121682)
chr1 (141-185)||(17180002-17180045)
chr1 (159-235)||(25036042-25036118)
chr1 (159-235)||(25041254-25041330)
chr1 (107-185)||(46101897-46101976)
chr1 (159-189)||(9414897-9414927)
chr1 (130-192)||(10462465-10462526)
chr1 (126-176)||(26537225-26537275)
chr1 (141-218)||(47507318-47507394)
chr1 (139-175)||(30674174-30674210)
chr1 (197-233)||(35395267-35395303)
[»] chr8 (11 HSPs)
chr8 (80-235)||(13637676-13637830)
chr8 (80-235)||(13738089-13738243)
chr8 (109-232)||(39028951-39029074)
chr8 (130-192)||(11943076-11943138)
chr8 (126-227)||(43345664-43345764)
chr8 (130-192)||(12949353-12949414)
chr8 (109-227)||(42639674-42639791)
chr8 (128-173)||(40463912-40463957)
chr8 (141-173)||(13903853-13903885)
chr8 (108-232)||(17785151-17785274)
chr8 (109-192)||(41568503-41568587)
[»] scaffold0166 (1 HSPs)
scaffold0166 (108-192)||(24045-24129)
[»] scaffold0009 (1 HSPs)
scaffold0009 (106-232)||(5833-5958)
[»] scaffold0581 (1 HSPs)
scaffold0581 (112-175)||(8937-9000)
[»] scaffold0086 (1 HSPs)
scaffold0086 (126-176)||(33813-33863)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 50 - 235
Target Start/End: Complemental strand, 30496553 - 30496368
Alignment:
Q  50 atatatacattttcattttaatattagaacatttatgtcgtttcacaaaattataactttctttcctttcattttattttcactttcattcataccaaac 149  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30496553 atatatacatattcattttaatattaggacatttatgtcgtttcacaaaattataactttctttcctttcactttattttcactttcattcataccaaac 30496454  T
Q  150 aactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttcttacctttca 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30496453 aactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttcttacctttca 30496368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 24163582 - 24163450
Alignment:
Q  100 ttataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttc 199  Q
    ||||| ||||||||||||||| ||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| |||| |   ||    
T  24163582 ttatatctttctttcctttcactttcttatcactttcattcattccaaacaact-aaacaatcatctcactttccattcaccttctacccactttcaatc 24163484  T
Q  200 cctaaacattctttccttttactttcttaccttt 233  Q
    | | | ||||||||||||| ||| |||| |||||    
T  24163483 ctttatcattctttcctttcactatctttccttt 24163450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 5606753 - 5606871
Alignment:
Q  108 ttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaaca 207  Q
    ||||||||||||| ||| || ||||||||| | ||| |||||||| |||  ||||||||||| ||| |  ||||||||||||||| |  |||| | ||||    
T  5606753 ttctttcctttcactttcttctcactttcacttataacaaacaaccaaat-aatcatctcacattctacccactttctactcactttcattccttcaaca 5606851  T
Q  208 ttctttccttttactttctt 227  Q
     |||||||||||||||||||    
T  5606852 atctttccttttactttctt 5606871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 31894002 - 31894108
Alignment:
Q  126 ttttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttc 225  Q
    |||||||||||||| |||||||| ||| ||||||||||||||||||||| ||| ||||||| ||| | |   ||| || || |||||||||| |||||||    
T  31894002 ttttcactttcatttataccaaataac-aaaacaatcatctcactttcctttccctttctattcaatttcaatccttatactttctttccttctactttc 31894100  T
Q  226 ttaccttt 233  Q
    || |||||    
T  31894101 tttccttt 31894108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 4748160 - 4748241
Alignment:
Q  146 aaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttctt 227  Q
    ||||||| |||| |||||||||||||| ||||||||||||  ||||| |  |||| | |||| |||||||||||||||||||    
T  4748160 aaacaaccaaaataatcatctcacttttcattcactttcttttcactttcattcctttaacaatctttccttttactttctt 4748241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 6142894 - 6142859
Alignment:
Q  155 aaacaatcatctcactttccattcactttctactca 190  Q
    ||||||||||||||||||||||||||||||||||||    
T  6142894 aaacaatcatctcactttccattcactttctactca 6142859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 18289974 - 18289892
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctact 188  Q
    |||||||||||| || ||| |  ||||||||| ||| ||||||||||||  | |||||||| ||||| |||||||||||||||    
T  18289974 ctttctttccttccactttttaatcactttcactcaaaccaaacaactatgaaaatcatcttacttttcattcactttctact 18289892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 23954271 - 23954226
Alignment:
Q  128 ttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    ||||||||| || ||||||||||||||||| |||||||||||||||    
T  23954271 ttcactttcttttataccaaacaactaaaataatcatctcactttc 23954226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 3718426 - 3718358
Alignment:
Q  159 aatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttctt 227  Q
    |||||||| ||||||| || |||||||| ||||| |  |||| ||| ||||||||||||||||||||||    
T  3718426 aatcatcttactttccttttactttctattcactttcattccataatcattctttccttttactttctt 3718358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 21453348 - 21453431
Alignment:
Q  108 ttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    ||||||||| ||| ||| |||||||||||| | |||||||| ||| ||| |||||||||||| |||| ||| ||||||| |||||    
T  21453348 ttctttcctctcactttcttttcactttcaattataccaaaaaaccaaa-caatcatctcacattcctttccctttctattcact 21453431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 14590222 - 14590124
Alignment:
Q  128 ttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttctt 227  Q
    |||||||||| || ||||||||||| |||| ||||| ||||||||||| | ||||| ||| ||||||  |||| | |||| || ||||| ||||||||||    
T  14590222 ttcactttcactcttaccaaacaaccaaaaaaatcaactcactttccacttactttatac-cactatcattccattaacaatcattcctcttactttctt 14590124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 12101200 - 12101245
Alignment:
Q  128 ttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    ||||||||| || ||||||||||||| ||| |||||||||||||||    
T  12101200 ttcactttcttttataccaaacaactcaaataatcatctcactttc 12101245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 34516364 - 34516412
Alignment:
Q  130 cactttcattcataccaaacaactaaaacaatcatctcactttccattc 178  Q
    ||||||| || |||||||||||| ||||||||| |||||||||| ||||    
T  34516364 cactttcttttataccaaacaaccaaaacaatcctctcactttctattc 34516412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 42237059 - 42236896
Alignment:
Q  64 attttaatattagaacatttatgtcgtttcacaaaattataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatca 163  Q
    |||||||||| || ||||||||||| ||| | ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  42237059 attttaatataaggacatttatgtcattttaaaaaattatatcattctttcctttcattttattctcactttcattcataccaaacaacaaaaataatca 42236960  T
Q  164 tctcactttccattcactttctactcactatttttccctaaacattctttccttttactttctt 227  Q
    ||||||||||||||||||||||||||||||| ||||| | || |||||||||||| ||||||||    
T  42236959 tctcactttccattcactttctactcactatctttcctttaatattctttcctttcactttctt 42236896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 45043455 - 45043368
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactat 194  Q
    ||||||||||||||| ||| || |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  45043455 ctttctttcctttcactttcttatcactttcattcattccaaacaactaaa-caatcatctcactttccattcactttctacccactat 45043368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 235
Target Start/End: Original strand, 32157404 - 32157530
Alignment:
Q  108 ttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaaca 207  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||  |||| |||||||| |||||||| || ||| | ||||||| |  |||| ||||||    
T  32157404 ttctttcctttcactttcttttcactttcactcataccaaacaatcaaaa-aatcatctaactttccactctcttaccactcactttcattccttaaaca 32157502  T
Q  208 ttctttccttttactttcttacctttca 235  Q
    |||||||||||||||||||| |||||||    
T  32157503 ttctttccttttactttctttcctttca 32157530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 54042055 - 54041931
Alignment:
Q  100 ttataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttc 199  Q
    ||||| ||||||||||||||| ||| || ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |   ||    
T  54042055 ttatatctttctttcctttcactttcttatca-tttcattcattccaaacaactaaa-caatcatctcactttccattcactttctacccactttcaatc 54041958  T
Q  200 cctaaacattctttccttttactttct 226  Q
    | | | ||||||||||||||| |||||    
T  54041957 ctttatcattctttccttttaatttct 54041931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 12865217 - 12865319
Alignment:
Q  81 tttatgtcgtttcacaaaattataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcac 180  Q
    |||||||| ||| | ||||  ||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||| |||||||  |||||||| ||||    
T  12865217 tttatgtcatttaataaaaccataactttctttcctctcattttcttttcactttcactaataccaaacaactaaaa-aatcatcaaactttccactcac 12865315  T
Q  181 tttc 184  Q
    ||||    
T  12865316 tttc 12865319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 42150240 - 42150322
Alignment:
Q  109 tctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||  ||||| |||||| |||||    
T  42150240 tctttcctttcaatttctttccactttcattcataccaaacaactaaaa-aatcatctcactttttattcattttctattcact 42150322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 52632900 - 52633004
Alignment:
Q  127 tttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttct 226  Q
    ||||||||||| | ||||||||||||||||| |||||||||||||||||  ||||||||| ||||| | |||||   |||| || |||||||||||||||    
T  52632900 tttcactttcactaataccaaacaactaaaa-aatcatctcactttccacccactttctattcactttctttcctctaacaatcattccttttactttct 52632998  T
Q  227 tacctt 232  Q
    | ||||    
T  52632999 ttcctt 52633004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 37370250 - 37370332
Alignment:
Q  101 tataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttc 184  Q
    |||| ||||||||||||||  ||| || ||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||    
T  37370250 tatatctttctttcctttccgtttcttctcactttcatttatatcaaacaactaaaa-aatcatctcactttccactcactttc 37370332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 40414009 - 40414134
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaa 205  Q
    ||||||||||||||| ||| |||||||| ||| | |||| ||||||| |||| |||||||| |||||| | || ||||| | ||||| |  |||| ||||    
T  40414009 ctttctttcctttcactttcttttcactatcacttatactaaacaacaaaaa-aatcatcttactttctactctctttccattcactttcattccttaaa 40414107  T
Q  206 cattctttccttttactttcttacctt 232  Q
    |||||||||| ||||||||||| ||||    
T  40414108 cattctttccatttactttctttcctt 40414134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 48316242 - 48316138
Alignment:
Q  127 tttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttct 226  Q
    ||||||||||| | ||||||||||||||||| ||||||||||||||| | |||||||||| ||||| | |||||   |||| || |||||||||| ||||    
T  48316242 tttcactttcactaataccaaacaactaaaa-aatcatctcactttctactcactttctattcactttctttcctctaacaatcattccttttaccttct 48316144  T
Q  227 tacctt 232  Q
    | ||||    
T  48316143 ttcctt 48316138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 232
Target Start/End: Original strand, 53401641 - 53401773
Alignment:
Q  101 tataactttctttcctttcattttattttcactttcattcataccaaacaa-ctaaaacaatcatctcactttccattcactttctactcactatttttc 199  Q
    |||| ||||||||||||  | ||| || ||||||||| | ||||||||||| |||||| ||||||||||||||||| | | |||||||||||| |  |||    
T  53401641 tatatctttctttccttcaactttcttatcactttcacttataccaaacaaactaaaataatcatctcactttccacttaatttctactcactttcattc 53401740  T
Q  200 cctaaacattctttccttttactttcttacctt 232  Q
    | | | ||||||||||| ||||| |||| ||||    
T  53401741 ctttaccattctttcctcttactatctttcctt 53401773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 50373214 - 50373157
Alignment:
Q  126 ttttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttc 184  Q
    |||||| |||||||||||||||||| || ||||||||||| ||||||||||||||||||    
T  50373214 ttttcaatttcattcataccaaaca-ctgaaacaatcatcccactttccattcactttc 50373157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 23254971 - 23255052
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctac 187  Q
    ||||||||||||||| ||| |  ||||||||| ||| ||||| ||||||  | |||||||| ||||||||||||||||||||    
T  23254971 ctttctttcctttcactttttaatcactttcactcaaaccaagcaactatgaaaatcatcttactttccattcactttctac 23255052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 29696739 - 29696612
Alignment:
Q  107 tttctttcctttcattttattttcactttca-ttcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaa 205  Q
    |||||||||| ||| ||| | |||||||||| |||| |||||||||| | || |||||| |||||||||| |||| ||| ||||||| |  |||| ||||    
T  29696739 tttctttcctctcactttctattcactttcacttca-accaaacaaccataa-aatcatatcactttccactcacattccactcactttcattccttaaa 29696642  T
Q  206 cattctttccttttactttcttacctttca 235  Q
    |||||||||||  ||||||||| |||||||    
T  29696641 cattctttcctcatactttctttcctttca 29696612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 53298332 - 53298212
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaa 205  Q
    ||||||||||||||| |||  | |||||||||| |||| ||||||||| ||| |||||| |||||||||||| | ||||||  |||| |  |||| | ||    
T  53298332 ctttctttcctttcactttcctatcactttcatccatagcaaacaact-aaataatcatatcactttccatttattttctatccactttcattcctttaa 53298234  T
Q  206 cattctttccttttactttctt 227  Q
    ||||||| ||||| ||||||||    
T  53298233 cattcttacctttcactttctt 53298212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 48684497 - 48684552
Alignment:
Q  128 ttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttc 184  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||||| |||||||    
T  48684497 ttcactttcactcataccaaacaactaaaa-aatcatcttactttccatacactttc 48684552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 7986165 - 7986106
Alignment:
Q  116 tttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttcca 175  Q
    ||||| ||| |||||||||||| | ||||||||||||||||  |||||||||||||||||    
T  7986165 tttcactttcttttcactttcacttataccaaacaactaaacaaatcatctcactttcca 7986106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 36569470 - 36569364
Alignment:
Q  127 tttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttct 226  Q
    ||||||||||| ||||| ||||||||| |||||||||||| |||||| ||| |  |||||  |||| |  |||| ||||||||| ||||||| |||||||    
T  36569470 tttcactttcactcatatcaaacaact-aaacaatcatcttactttctatttatcttctatccactttcattccttaaacattcgttcctttcactttct 36569372  T
Q  227 tacctttc 234  Q
    | ||||||    
T  36569371 ttcctttc 36569364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 23752677 - 23752802
Alignment:
Q  109 tctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacat 208  Q
    ||||||||||   ||| ||| ||||||| |||||||||||||  ||||  |||||||||||||| |||||| ||||||||| || |  |||| | ||||     
T  23752677 tctttcctttgtctttctttccactttctttcataccaaacagttaaat-aatcatctcacttttcattcattttctactctctttcattccttcaacaa 23752775  T
Q  209 tctttccttttactttcttacctttca 235  Q
    |||||||||||| | |||| |||||||    
T  23752776 tctttccttttattatctttcctttca 23752802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 40413273 - 40413216
Alignment:
Q  127 tttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttct 185  Q
    ||||||| ||||| ||||||||||||||||| ||||||| ||||||||| |||||||||    
T  40413273 tttcactatcatttataccaaacaactaaaa-aatcatcacactttccactcactttct 40413216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 47631224 - 47631167
Alignment:
Q  132 ctttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactca 190  Q
    |||||||||| ||||||||||||||  |||||||| ||||| |||||||||||||||||    
T  47631224 ctttcattcaaaccaaacaactaaat-aatcatcttacttttcattcactttctactca 47631167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 50500980 - 50501038
Alignment:
Q  130 cactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctact 188  Q
    ||||||||||| ||||||||||| |||  |||||||||||||| || ||||||||||||    
T  50500980 cactttcattcctaccaaacaaccaaataaatcatctcacttttcactcactttctact 50501038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 51333026 - 51333087
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctca 168  Q
    ||||||||||||||| ||| || ||||||||||| ||||||||||||  ||||||||||||||    
T  51333026 ctttctttcctttcactttcttctcactttcatttataccaaacaac-caaacaatcatctca 51333087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 55290550 - 55290489
Alignment:
Q  111 tttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcacttt 172  Q
    ||||||| |||||| | |||||||||  ||||||||||| |||||||||||| |||||||||    
T  55290550 tttccttccattttctattcactttctctcataccaaaccactaaaacaatcctctcacttt 55290489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 18910423 - 18910340
Alignment:
Q  143 accaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttctt 227  Q
    ||||||||||||||  |||||||||| ||| || | |||||||||||||| |  |||| | |||| |||||||||||||||||||    
T  18910423 accaaacaactaaat-aatcatctcatttttcacttactttctactcactttcattccttcaacaatctttccttttactttctt 18910340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 45072985 - 45073090
Alignment:
Q  126 ttttcactttcattcataccaaacaactaaaacaatcatctcactttccat--tcactttctac--tcactatttttccctaaacattctttccttttac 221  Q
    |||||||||||| |  |||||||||||||||  ||||||||||||||||||  || |||||| |  ||||| | ||||| || || ||||||||||| ||    
T  45072985 ttttcactttcacttttaccaaacaactaaacaaatcatctcactttccatgatctctttctcctttcactttctttccttagactttctttcctttcac 45073084  T
Q  222 tttctt 227  Q
    ||||||    
T  45073085 tttctt 45073090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 26416253 - 26416315
Alignment:
Q  159 aatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttac 221  Q
    |||||||||||||| ||||||||||||||||||| || |||| | |||  ||||||| |||||    
T  26416253 aatcatctcacttttcattcactttctactcacttttattccttcaactatctttccatttac 26416315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 29696464 - 29696510
Alignment:
Q  127 tttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    |||||||||| ||||||||||||||| |||||||||  |||||||||    
T  29696464 tttcactttctttcataccaaacaaccaaaacaatctcctcactttc 29696510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 52607011 - 52607060
Alignment:
Q  135 tcattcataccaaacaactaaaacaatcatctcactttccattcactttct 185  Q
    ||||||||||||||||| ||||| ||||||| ||||||||| |||||||||    
T  52607011 tcattcataccaaacaattaaaa-aatcatcacactttccactcactttct 52607060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 5573993 - 5573929
Alignment:
Q  127 tttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    ||||||||||| | |||||||||||| ||| |||||||||||| |||| ||| ||||||| |||||    
T  5573993 tttcactttcacttataccaaacaaccaaa-caatcatctcacattcctttccctttctattcact 5573929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 19600517 - 19600600
Alignment:
Q  109 tctttcctttcattttattt-tcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    |||||| ||||||||| ||| ||||||||  | ||||||||||||||||  ||||||||||||||||| | | |||||| |||||    
T  19600517 tctttcttttcattttctttctcactttctcttataccaaacaactaaat-aatcatctcactttccacttattttctattcact 19600600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 27301600 - 27301691
Alignment:
Q  140 cataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttcttacctt 232  Q
    ||||||||||||||||| ||||||||  |||||  | || ||||||||||||| | ||||| | |||| |||||||||  |||||||| ||||    
T  27301600 cataccaaacaactaaa-caatcatcctactttttactctctttctactcactttctttcctttaacaatctttccttacactttctttcctt 27301691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 51923458 - 51923571
Alignment:
Q  108 ttctttcctttcattttattttcactt---tcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaa 204  Q
    ||||||||||||| ||| ||||||||    ||| ||||||||||||||||||| | |||||  |||||||  || | ||| ||||||| |  |||| |||    
T  51923458 ttctttcctttcactttcttttcactaatatcactcataccaaacaactaaaa-agtcatcatactttcctctctcattccactcactttcattccttaa 51923556  T
Q  205 acattctttcctttt 219  Q
    |||||||||||||||    
T  51923557 acattctttcctttt 51923571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 37660654 - 37660793
Alignment:
Q  82 ttatgtcgtttcacaaaattataactttctttcctttcattttattttcactttcattcataccaaacaactaaa---acaatcatctcactttccattc 178  Q
    ||||||| ||||| |||  |||| ||||||||||||||| ||| |||||||||||||| ||| ||||||||||||   ||||||||||||||||||||||    
T  37660654 ttatgtcttttcaaaaatatatatctttctttcctttcactttcttttcactttcatttataacaaacaactaaacaaacaatcatctcactttccattc 37660753  T
Q  179 actttctactcactatttttccctaaacattctttccttt 218  Q
    |||||||||||||| | | ||| | |||| ||||||||||    
T  37660754 actttctactcactttctatccatcaacaatctttccttt 37660793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 5185861 - 5185743
Alignment:
Q  108 ttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaaca 207  Q
    |||||||||||||||||  | ||||||||| ||||| ||||||||| |||||||||||| |||||||||| |  |||||  |||| |  |||| ||||||    
T  5185861 ttctttcctttcattttcctatcactttcactcatatcaaacaact-aaacaatcatcttactttccatttatcttctatccactttcattccttaaaca 5185763  T
Q  208 ttctttccttttactttctt 227  Q
    ||||||||||| ||||||||    
T  5185762 ttctttcctttcactttctt 5185743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 6150228 - 6150095
Alignment:
Q  101 tataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttcc 200  Q
    ||||||| |||||||||||| ||| ||   ||| ||| ||| ||||||||||||||  |||||| |||||||||| |||||||||||||||| |  ||||    
T  6150228 tataactatctttcctttcactttcttcatactatcactcaaaccaaacaactaaat-aatcatttcactttccactcactttctactcactttcattcc 6150130  T
Q  201 ctaaacattctttccttttactttcttacctttca 235  Q
     | |||| |||||||||||||| |||| |||||||    
T  6150129 ttcaacaatctttccttttactatctttcctttca 6150095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 27892612 - 27892697
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcac 191  Q
    ||||||||||||||| ||| |  |||||||||  || ||||||||||||  | |||||||| ||||||||||||||||||||||||    
T  27892612 ctttctttcctttcactttttaatcactttcacacaaaccaaacaactatgaaaatcatcttactttccattcactttctactcac 27892697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 39731012 - 39730888
Alignment:
Q  108 ttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaaca 207  Q
    ||||||||||||| ||| |||||||| | | |||||||||||||| |||| |||||||| |||||||  || | ||| |||| || |  |||| ||||||    
T  39731012 ttctttcctttcactttcttttcactattactcataccaaacaaccaaaa-aatcatcttactttcctctctcattccactcgctttcattccttaaaca 39730914  T
Q  208 ttctttccttttactttcttaccttt 233  Q
    || ||||||||||||||||| |||||    
T  39730913 ttatttccttttactttctttccttt 39730888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 40772065 - 40772192
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaa 205  Q
    ||||||||||| ||| ||| |   |||||||| || ||  ||||||| |||| |||||||||||||||||||||||||||  ||||| |  |||| | ||    
T  40772065 ctttctttcctctcactttctcaccactttcactcctaataaacaaccaaaataatcatctcactttccattcactttctcttcactttcattcctttaa 40772164  T
Q  206 cattctttccttttactttcttaccttt 233  Q
    || |||||||| |||||||||| |||||    
T  40772165 caatctttcctcttactttctttccttt 40772192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 18061384 - 18061316
Alignment:
Q  159 aatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttctt 227  Q
    |||||||| ||||||| ||||||||||| ||||| |  |||| ||| ||||||||||||||||||||||    
T  18061384 aatcatcttactttcctttcactttctattcactttcattccttaatcattctttccttttactttctt 18061316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 35048197 - 35048264
Alignment:
Q  121 ttttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactc 189  Q
    |||| ||| ||||||| || |||||||||| || ||| |||||||||||||||||||||||||||||||    
T  35048197 ttttctttccactttctttgataccaaaca-cttaaataatcatctcactttccattcactttctactc 35048264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 235
Target Start/End: Complemental strand, 7136991 - 7136866
Alignment:
Q  109 tctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacat 208  Q
    |||||||||||| ||| || ||||  ||||||| || |||||||||||| ||||||||||||||  | ||||||||||  |||| |  |||| |  ||||    
T  7136991 tctttcctttcactttcttctcaccatcattcaaactaaacaactaaaa-aatcatctcactttttactcactttctatccactttcattccttttacat 7136893  T
Q  209 tctttccttttactttcttacctttca 235  Q
    |||||||||| ||||| || |||||||    
T  7136892 tctttcctttaactttatttcctttca 7136866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 16803396 - 16803351
Alignment:
Q  139 tcataccaaacaactaaaacaatcatctcactttccattcactttct 185  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  16803396 tcataccaaacaactaaaa-aatcatcacactttccattcactttct 16803351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 16842679 - 16842634
Alignment:
Q  139 tcataccaaacaactaaaacaatcatctcactttccattcactttct 185  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  16842679 tcataccaaacaactaaaa-aatcatcacactttccattcactttct 16842634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 7293167 - 7293122
Alignment:
Q  139 tcataccaaacaactaaaacaatcatctcactttccattcactttct 185  Q
    ||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  7293167 tcataccaaacaactaaaa-aatcatcgcactttccactcactttct 7293122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 9367988 - 9368029
Alignment:
Q  130 cactttcattcataccaaacaactaaaacaatcatctcacttt 172  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  9367988 cactttcactcataccaaacaactaaaa-aatcatctcacttt 9368029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 33698510 - 33698643
Alignment:
Q  101 tataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttcc 200  Q
    |||| ||||||||||||||| ||| || ||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||| |  ||||    
T  33698510 tatatctttctttcctttcaatttcttctcactttcatttataccaaacaactaaaa-tatcatctcactttccattcacattctactcactttcattcc 33698608  T
Q  201 ctaaacattctttccttttactttcttacctttca 235  Q
     | || | |||||||| ||||| |||| |||||||    
T  33698609 ttcaataatctttcctcttactatctttcctttca 33698643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 45463376 - 45463258
Alignment:
Q  109 tctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacat 208  Q
    |||||||||||| ||| |  |||| |||||||||||||||||||||||| |||||||  | ||||||||||||||||||||||  |  |||| ||| ||     
T  45463376 tctttcctttcactttctactcacattcattcataccaaacaactaaaataatcatcatattttccattcactttctactcacattcattccttaaccaa 45463277  T
Q  209 tctttccttttactttctt 227  Q
    ||||||||| |||||||||    
T  45463276 tctttccttatactttctt 45463258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 7345117 - 7345208
Alignment:
Q  101 tataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    |||| |||||||||||| || ||| || ||| ||||||| |||||||||||| |||| |||||||| |||||||||||||||| ||||||||    
T  7345117 tatatctttctttccttccactttcttatcattttcatttataccaaacaaccaaaataatcatcttactttccattcactttttactcact 7345208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 47421008 - 47421086
Alignment:
Q  107 tttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttcta 186  Q
    |||||||||| ||| |||   |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47421008 tttctttcctctcacttttgattcactttcactcataccaaacaactaaaa-aatcatctcactttccattcactttcta 47421086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 43988244 - 43988140
Alignment:
Q  127 tttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttct 226  Q
    ||||||||||| | ||||||||||||||||| |||||||||||||||||  ||||||||| ||||| | |||||   |||| || |||||||||||||||    
T  43988244 tttcactttcactaataccaaacaactaaaa-aatcatctcactttccacccactttctattcactttctttcctctaacaatcattccttttactttct 43988146  T
Q  227 tacctt 232  Q
    | ||||    
T  43988145 ttcctt 43988140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 33800459 - 33800352
Alignment:
Q  131 actttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttcttacc 230  Q
    ||||||| || || |||||||||||||||||||||||||||||||||||||||||  ||||| |  |||| | |||| |||||  | |||||||||| ||    
T  33800459 actttcactcctaacaaacaactaaaacaatcatctcactttccattcactttctcttcactttcattcctttaacaatcttttatgttactttctttcc 33800360  T
Q  231 tttcatat 238  Q
    ||| ||||    
T  33800359 ttttatat 33800352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 31205970 - 31205902
Alignment:
Q  159 aatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttctt 227  Q
    |||||||| ||||||| ||||||||||| ||||| || |||| ||| ||||||||||||||||||||||    
T  31205970 aatcatcttactttcctttcactttctattcacttttattccttaatcattctttccttttactttctt 31205902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 31553083 - 31553166
Alignment:
Q  102 ataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttct 185  Q
    ||||||||||||||| ||| ||| |   |||||||  || || ||||||||||||| |||||||||||| ||||||||||||||    
T  31553083 ataactttctttcctctcactttctcaccactttcgctcctaacaaacaactaaaaaaatcatctcactctccattcactttct 31553166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 25102292 - 25102421
Alignment:
Q  106 ctttctttcctttcattttattttcactttca-ttcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaa 204  Q
    ||||||||||| ||||||| | |||||||||| |||| |||||||||   | | |||||| |||||||||| |||| ||||||||||| |  |||  | |    
T  25102292 ctttctttcctctcattttctattcactttcacttca-accaaacaaaccagaaaatcatatcactttccactcacattctactcactttcattctttca 25102390  T
Q  205 acattctttccttttactttcttacctttca 235  Q
    ||||||||||||| |||| |||| |||||||    
T  25102391 acattctttccttatactatctttcctttca 25102421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 36250652 - 36250709
Alignment:
Q  127 tttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttct 185  Q
    ||||||| ||||| ||||||||||||||||| ||||||| ||||||||| |||||||||    
T  36250652 tttcactatcatttataccaaacaactaaaa-aatcatcacactttccactcactttct 36250709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 2366964 - 2367040
Alignment:
Q  96 aaaattataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    |||||||  |||||||||||| ||| ||| |||||||||||||||  | |||||| |||||| |||||||||||||||    
T  2366964 aaaattaggactttctttcctctcactttcttttcactttcattctaatcaaacacctaaaa-aatcatctcactttc 2367040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 28132292 - 28132357
Alignment:
Q  105 actttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    |||||||||||| ||| ||| |||||||||||||  ||||||||||||  |||||||||||||||||||    
T  28132292 actttctttcctctcactttcttttcactttcat--ataccaaacaac-caaacaatcatctcactttc 28132357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 33055528 - 33055573
Alignment:
Q  128 ttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    |||||||||  | |||||||||||||||||||||||||||||||||    
T  33055528 ttcactttctcttataccaaacaactaaaacaatcatctcactttc 33055573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 44184791 - 44184723
Alignment:
Q  159 aatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttctt 227  Q
    |||||||  ||||||| ||||||||||| ||||| |  |||| ||| ||||||||||||||||||||||    
T  44184791 aatcatcatactttcctttcactttctattcactttcattccttaatcattctttccttttactttctt 44184723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 2736005 - 2735951
Alignment:
Q  129 tcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttc 184  Q
    ||||||||| |||||||||||||| |||| |||||||| |||||||| ||||||||    
T  2736005 tcactttcactcataccaaacaaccaaaa-aatcatctaactttccactcactttc 2735951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 44623907 - 44623820
Alignment:
Q  129 tcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttcct 216  Q
    ||||||||| | ||||||||||||||||| ||| ||||||||||||| | | |||||| ||||| |  |||| | | |||||||||||    
T  44623907 tcactttcacttataccaaacaactaaaataattatctcactttccacttaatttctagtcactttcattcctttaccattctttcct 44623820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 21271487 - 21271520
Alignment:
Q  159 aatcatctcactttccattcactttctactcact 192  Q
    |||||||||||||| |||||||||||||||||||    
T  21271487 aatcatctcacttttcattcactttctactcact 21271520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 31011652 - 31011607
Alignment:
Q  128 ttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    ||||||||| || ||||||||| || ||||||||||||||||||||    
T  31011652 ttcactttcttttataccaaaccaccaaaacaatcatctcactttc 31011607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 45223692 - 45223647
Alignment:
Q  128 ttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    |||||||||  | |||||||||||||||||||||| ||||||||||    
T  45223692 ttcactttctcttataccaaacaactaaaacaatcctctcactttc 45223647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 2735612 - 2735488
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaa 205  Q
    |||||||||||| || ||| |||||||| ||| |||||||||||||| |||| |||||| | ||||||  | | ||||| ||||||| |  |||  ||||    
T  2735612 ctttctttccttacactttcttttcactatcactcataccaaacaaccaaaa-aatcattttactttc--tactctttccactcactttcattctttaaa 2735516  T
Q  206 cattctttccttttactttcttaccttt 233  Q
    || |||||| ||||| |||||| |||||    
T  2735515 caatctttctttttattttctttccttt 2735488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 29005998 - 29006034
Alignment:
Q  139 tcataccaaacaactaaaacaatcatctcactttcca 175  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  29005998 tcataccaaactactaaaacaatcctctcactttcca 29006034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 30854556 - 30854445
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaa 205  Q
    |||||||||||| || ||| |||||||| ||| | |||||||||||| |||| || ||||| |||||| | || ||||| ||| ||| |  |||| |||     
T  30854556 ctttctttccttgcactttcttttcactatcactaataccaaacaaccaaaa-aaccatcttactttctactctctttccacttactttcattccttaag 30854458  T
Q  206 cattctttccttt 218  Q
    |||||||||||||    
T  30854457 cattctttccttt 30854445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 38477750 - 38477718
Alignment:
Q  141 ataccaaacaactaaaacaatcatctcactttc 173  Q
    ||||||||||||||| |||||||||||||||||    
T  38477750 ataccaaacaactaatacaatcatctcactttc 38477718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 4277 - 4168
Alignment:
Q  80 atttatgtcgtttcacaaaattataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattca 179  Q
    ||||||||| |||  |||| ||||| ||||||||||||| | ||| || |||||||||||||| ||||| |||| |||||||||||||| ||||||||||    
T  4277 atttatgtcatttgccaaatttatatctttctttccttttactttcttatcactttcattcattccaaataact-aaacaatcatctcattttccattca 4179  T
Q  180 ctttctactca 190  Q
    |||||||||||    
T  4178 ctttctactca 4168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 6231239 - 6231336
Alignment:
Q  130 cactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttctt 227  Q
    |||||||| |||||||||||||| |||| |||||||| ||||||||||||||||||||||| | |  |||| | |||| |||||||| ||||||||||    
T  6231239 cactttcactcataccaaacaaccaaaaaaatcatctaactttccattcactttctactcattttcattccttcaacaatctttcctcttactttctt 6231336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 8166334 - 8166229
Alignment:
Q  121 ttttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttcctttta 220  Q
    |||| |||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||||  || ||| | ||||| | |||| |||||||| |||    
T  8166334 ttttcttttcactttcactcataccaaaca-ctcaaacaatcatcccactttccattcactttcctcttactttctttcctttaacaatctttcctctta 8166236  T
Q  221 ctttctt 227  Q
    |||||||    
T  8166235 ctttctt 8166229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 12005618 - 12005516
Alignment:
Q  130 cactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttcttac 229  Q
    |||||||| | ||||||||||||||||| |||| ||| ||||||||||||||||||||||||| |  |||| | |||| |||||||| ||||| |||| |    
T  12005618 cactttcacttataccaaacaactaaaaaaatcgtctaactttccattcactttctactcactttcattcctttaacaatctttcctcttactatctttc 12005519  T
Q  230 ctt 232  Q
    |||    
T  12005518 ctt 12005516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 24781746 - 24781662
Alignment:
Q  108 ttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    ||||||||| ||||||| |||||||||||| | ||| ||||||||||||| ||||||| || |||||| ||| ||||||||||||    
T  24781746 ttctttcctctcattttcttttcactttcactaatatcaaacaactaaaaaaatcatcacattttccactcaatttctactcact 24781662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 1199551 - 1199676
Alignment:
Q  101 tataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttcc 200  Q
    ||||||| || ||||||||| ||| ||   ||| ||| ||| ||||||||||||||  |||||| |||||||||| |||||||||||||||| |  ||||    
T  1199551 tataactatcattcctttcactttcttcatactatcactcaaaccaaacaactaaat-aatcatttcactttccactcactttctactcactttcattcc 1199649  T
Q  201 ctaaacattctttccttttactttctt 227  Q
     | |||| |||||||||| ||||||||    
T  1199650 ttcaacaatctttcctttcactttctt 1199676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 22964043 - 22963943
Alignment:
Q  126 ttttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttc 225  Q
    |||||||||||| ||||||||||||  | ||||||||||| ||||||||||||||||||  || ||| | | ||| | |||| |||||||| ||||||||    
T  22964043 ttttcactttcactcataccaaacat-tcaaacaatcatcccactttccattcactttcctcttactttctctcctttaacaatctttcctcttactttc 22963945  T
Q  226 tt 227  Q
    ||    
T  22963944 tt 22963943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 28613378 - 28613442
Alignment:
Q  127 tttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    ||||||||||  ||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||    
T  28613378 tttcactttctgtcataccaaacaactaaaa-aatcatcttacttttcattcactttctattcact 28613442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 35206183 - 35206134
Alignment:
Q  135 tcattcataccaaacaactaaaacaatcatctcactttccattcactttct 185  Q
    ||||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  35206183 tcattcataccaaacaactaaaa-aatcatcacactttccactcactttct 35206134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 23153675 - 23153630
Alignment:
Q  128 ttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    ||||||||| || |||||||||||| ||||||||||||||||||||    
T  23153675 ttcactttcttttataccaaacaaccaaaacaatcatctcactttc 23153630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 35210969 - 35211017
Alignment:
Q  135 tcattcataccaaacaactaaaacaatcatctcactttccattcactttc 184  Q
    ||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  35210969 tcattcataccaaacaactaaaa-aatcatcacactttccactcactttc 35211017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 35112523 - 35112616
Alignment:
Q  131 actttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttc 225  Q
    ||||||| || ||||||||||| || | ||||||||||||||| | ||||||||| || ||| | ||||| | |||| |||||||| ||||||||    
T  35112523 actttcactcttaccaaacaaccaaca-aatcatctcactttctactcactttcttcttactttctttcctttaacaatctttcctcttactttc 35112616  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 173
Target Start/End: Original strand, 33863377 - 33863469
Alignment:
Q  80 atttatgtcgtttcacaaaattataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    ||||||||| ||||| |||  |||| |||| |||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  33863377 atttatgtcatttcataaatgtatatctttatttcctttcactttcttttcactttcattcatatcaaacaact-aaacaatcatctcactttc 33863469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 6955873 - 6956027
Alignment:
Q  80 atttatgtcgtttcacaaaattataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattca 179  Q
    ||||||||| ||| | |||| |||| || |||||||||  | ||| ||| ||||||| |  ||||||||||||||||  ||||||||| |||||||||||    
T  6955873 atttatgtcatttaataaaaatatatctatctttccttcaactttctttccactttcttcgataccaaacaactaaat-aatcatctctctttccattca 6955971  T
Q  180 ctttctactcactatttttccctaaacattctttccttttactttcttacctttca 235  Q
    ||||||||||||| |  |||| | |||| |||||||| ||||| |||| |||||||    
T  6955972 ctttctactcactttcattccttcaacaatctttcctcttactatctttcctttca 6956027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 12406158 - 12406075
Alignment:
Q  101 tataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttc 184  Q
    |||| ||||||||||||||| ||| || ||||||||| | ||||||||||||||||| ||||||||||||||| | ||||||||    
T  12406158 tatatctttctttcctttcacttttttatcactttcacttataccaaacaactaaaataatcatctcactttctactcactttc 12406075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 31301622 - 31301514
Alignment:
Q  80 atttatgtcgtttcacaaaattataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattca 179  Q
    ||||||||| |||  |||| |||||  |||||||||||||| ||| || | |||||||||||| ||||||||    ||||||||||| ||||| ||||||    
T  31301622 atttatgtcatttatcaaatttatatatttctttcctttcactttcttattactttcattcattccaaacaa----aacaatcatcttactttgcattca 31301527  T
Q  180 ctttctactcact 192  Q
    |||||||||||||    
T  31301526 ctttctactcact 31301514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 49032835 - 49032933
Alignment:
Q  128 ttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttctt 227  Q
    ||||||||||  | ||||||||||||||| |||||||||||||||||| |||||||||| ||||| |  |||| | ||||||||||||| || |||||||    
T  49032835 ttcactttcacccctaccaaacaactaaa-caatcatctcactttccactcactttctattcactttcattcctttaacattctttcctctttctttctt 49032933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 2032340 - 2032473
Alignment:
Q  101 tataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttcc 200  Q
    ||||||| ||||| |||||| ||| ||   ||| || |||| ||||||||||||||  |||||||||| ||||||||||||||||||||| | |  ||||    
T  2032340 tataactatcttttctttcactttcttcatactatctttcaaaccaaacaactaaat-aatcatctcattttccattcactttctactcattttcattcc 2032438  T
Q  201 ctaaacattctttccttttactttcttacctttca 235  Q
     | |||| |||||||||||||| |||| |||||||    
T  2032439 ttcaacaatctttccttttactatctttcctttca 2032473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 41055714 - 41055818
Alignment:
Q  130 cactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttcttac 229  Q
    ||||||| |||||||||||||  ||||  ||||||||||||||||||||||||||||||| || |  |||| | |||| |||||||| ||||| |||| |    
T  41055714 cactttctttcataccaaacagttaaat-aatcatctcactttccattcactttctactctctttcattccttcaacaatctttcctcttactatctttc 41055812  T
Q  230 ctttca 235  Q
    ||||||    
T  41055813 ctttca 41055818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 41054355 - 41054289
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    ||||||||||||||| ||| |  ||||||||||||||||||||| ||| |||||||||||||||||||    
T  41054355 ctttctttcctttcactttctactcactttcattcataccaaac-acttaaacaatcatctcactttc 41054289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 45973084 - 45973188
Alignment:
Q  127 tttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttct 226  Q
    |||||||||||||| ||||||||||| || | |||||| |||||||| | ||||||||| || ||| | ||||| | ||| ||||||||||| |||||||    
T  45973084 tttcactttcattcttaccaaacaaccaaca-aatcatttcactttctactcactttcttcttactttctttcctttaaccttctttcctttaactttct 45973182  T
Q  227 tacctt 232  Q
    | ||||    
T  45973183 ttcctt 45973188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 46970194 - 46970070
Alignment:
Q  108 ttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaaca 207  Q
    ||||||||||||| ||| |||||| | ||| |||||||||||||| |||| |||||||| |||||||  || | ||| ||||||| |  |||| | | ||    
T  46970194 ttctttcctttcactttcttttcattatcactcataccaaacaaccaaaa-aatcatcttactttcctctcccattccactcactttcattccttgagca 46970096  T
Q  208 ttctttccttttactttcttaccttt 233  Q
    ||||||| |||||||||||| |||||    
T  46970095 ttctttcattttactttctttccttt 46970070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 55006934 - 55007022
Alignment:
Q  101 tataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactca 190  Q
    ||||||| ||||| |||||||||| ||   ||| ||  ||| ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  55006934 tataactatcttttctttcattttcttcatactatctctcaaaccaaacaactaaat-aatcatctcactttccattcactttctactca 55007022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 47498433 - 47498503
Alignment:
Q  106 ctttctttc-ctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttcca 175  Q
    ||||||||| |||||| ||| |||||||||||| | ||| ||||||||||||  |||||||||||||||||    
T  47498433 ctttctttctctttcactttcttttcactttcacttatatcaaacaactaaataaatcatctcactttcca 47498503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 48647812 - 48647869
Alignment:
Q  128 ttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttct 185  Q
    ||||||||||||| ||||||||||| |||| ||||| || ||||| ||||||||||||    
T  48647812 ttcactttcattcctaccaaacaaccaaaataatcaacttacttttcattcactttct 48647869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 24828561 - 24828497
Alignment:
Q  111 tttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttcca 175  Q
    |||||| ||| ||| |||||||||||| | ||||||||||||||||| |||||  ||||||||||    
T  24828561 tttcctctcactttcttttcactttcacttataccaaacaactaaaaaaatcaaatcactttcca 24828497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 49952434 - 49952351
Alignment:
Q  108 ttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    ||||||| | ||| ||| |||||||||||| | |||||||||||| ||| |||||||||||| |||| ||| ||||||| |||||    
T  49952434 ttctttcatctcactttcttttcactttcacttataccaaacaaccaaa-caatcatctcacattcctttccctttctattcact 49952351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 32263311 - 32263218
Alignment:
Q  131 actttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttc 225  Q
    ||||||| || ||||||||||| || | ||||||||||||||| | ||||||||| || ||| | ||||| | ||||||||||||| | ||||||    
T  32263311 actttcactcttaccaaacaaccaaca-aatcatctcactttctactcactttcttcttactttctttcctttaacattctttcctataactttc 32263218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 28850090 - 28850122
Alignment:
Q  143 accaaacaactaaaacaatcatctcactttcca 175  Q
    |||||||||| ||||||||||||||||||||||    
T  28850090 accaaacaaccaaaacaatcatctcactttcca 28850122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 4861474 - 4861577
Alignment:
Q  82 ttatgtcgtttcacaaaattataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcact 181  Q
    ||||||| ||||| |||  |||| |||| |||||||| | ||| |||||||||||||| ||| ||||||||| ||||||||||||||||||| |||||||    
T  4861474 ttatgtcttttcaaaaatatatacctttttttccttttactttcttttcactttcatttataacaaacaact-aaacaatcatctcactttctattcact 4861572  T
Q  182 ttcta 186  Q
    |||||    
T  4861573 ttcta 4861577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 33775271 - 33775362
Alignment:
Q  101 tataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    |||| |||||||||||| || ||| || ||||||||| | || |||||||||||||| |||||||||| |||||| ||||||||||||||||    
T  33775271 tatatctttctttccttccactttcttatcactttcactaatgccaaacaactaaaataatcatctcattttccactcactttctactcact 33775362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 6222411 - 6222543
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaa 205  Q
    ||||||||||| ||| ||| |   |||||||| || || ||||||||||||||||||||||||||||||| |||||||||   |||| |  || | | ||    
T  6222411 ctttctttcctctcactttctcaccactttcactcctaacaaacaactaaaacaatcatctcactttccaatcactttctctccactttcatttctttaa 6222510  T
Q  206 cattctttccttttactttcttacctttcatat 238  Q
    || |||||||| |||||||||| ||||| ||||    
T  6222511 caatctttcctcttactttctttccttttatat 6222543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 37071120 - 37071036
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcac 191  Q
    ||||||||||||||| ||| |  |||||| || ||| ||||||||||||  | |||||||| ||||||||||||||||||||||||    
T  37071120 ctttctttcctttcactttttaatcactt-cactcaaaccaaacaactatgaaaatcatcttactttccattcactttctactcac 37071036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 3936627 - 3936516
Alignment:
Q  80 atttatgtcgtttcacaaaattataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattca 179  Q
    ||||||||| ||| | |||| ||||  | |||||||||  | ||| ||| ||||||| |  ||||||||||||||||  ||||||||| |||||||||||    
T  3936627 atttatgtcatttaataaaaatatatttatctttccttcaactttctttccactttcttcgataccaaacaactaaat-aatcatctctctttccattca 3936529  T
Q  180 ctttctactcact 192  Q
    |||||||||||||    
T  3936528 ctttctactcact 3936516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 38459110 - 38459186
Alignment:
Q  159 aatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttcttacctttca 235  Q
    ||||||||||||||||||||||||||||||| || |  |||| | |||| |||||||| ||||| |||| |||||||    
T  38459110 aatcatctcactttccattcactttctactctctttcattccttcaacaatctttcctcttactatctttcctttca 38459186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 23174163 - 23174228
Alignment:
Q  126 ttttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    |||||||||| | |||| |||||||||||||| ||| ||||||||||||||  ||||||||||||||    
T  23174163 ttttcacttttactcattccaaacaactaaaa-aattatctcactttccatcaactttctactcact 23174228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 35395376 - 35395311
Alignment:
Q  108 ttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttcc 174  Q
    |||||| |||||| ||| |||||||| ||| ||||||||||||||||||| |||||||| |||||||    
T  35395376 ttcttttctttcactttcttttcactatcactcataccaaacaactaaaa-aatcatcttactttcc 35395311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 46121682 - 46121637
Alignment:
Q  128 ttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    ||||||||| || ||||||||||||||||| |||||||||||||||    
T  46121682 ttcactttcttttataccaaacaactaaaataatcatctcactttc 46121637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 17180045 - 17180002
Alignment:
Q  141 ataccaaacaactaaaacaatcatctcactttccattcactttct 185  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||    
T  17180045 ataccaaacaactaaaa-aatcatcacactttccattcactttct 17180002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 25036042 - 25036118
Alignment:
Q  159 aatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttcttacctttca 235  Q
    |||||||||||||||||||||||||||| || || |  |||| | |||| |||||||| ||||| |||| |||||||    
T  25036042 aatcatctcactttccattcactttctagtctctttcattccttcaacaatctttcctcttactatctttcctttca 25036118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 25041254 - 25041330
Alignment:
Q  159 aatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttcttacctttca 235  Q
    |||||||||||||||||||||||||||| || || |  |||| | |||| |||||||| ||||| |||| |||||||    
T  25041254 aatcatctcactttccattcactttctagtctctttcattccttcaacaatctttcctcttactatctttcctttca 25041330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 46101897 - 46101976
Alignment:
Q  107 tttctttcctttcattttattttc-actttcattcataccaaacaactaaaacaatcatctcactttccattcactttct 185  Q
    |||||||||||||||||| || || ||||||  | |||||||||||| ||| ||||||||| |||||||| ||| |||||    
T  46101897 tttctttcctttcattttcttctctactttctcttataccaaacaaccaaatcaatcatcttactttccactcattttct 46101976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Complemental strand, 9414927 - 9414897
Alignment:
Q  159 aatcatctcactttccattcactttctactc 189  Q
    |||||||||||||||||||||||||||||||    
T  9414927 aatcatctcactttccattcactttctactc 9414897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 10462465 - 10462526
Alignment:
Q  130 cactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    |||||||| ||||||||||||||||||| ||||||  || |||||||||| |||||| |||||    
T  10462465 cactttcactcataccaaacaactaaaa-aatcattccattttccattcattttctattcact 10462526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 26537225 - 26537275
Alignment:
Q  126 ttttcactttcattcataccaaacaactaaaacaatcatctcactttccat 176  Q
    |||||||||||| |  |||||||||||||||  ||||||||||||||||||    
T  26537225 ttttcactttcacttttaccaaacaactaaacaaatcatctcactttccat 26537275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 47507318 - 47507394
Alignment:
Q  141 ataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttt 218  Q
    |||||||||||| |||| |||||||| |||||| | || ||||| ||||||| |  |||| |||||||||||||||||    
T  47507318 ataccaaacaaccaaaa-aatcatcttactttctactctctttccactcactttcattccttaaacattctttccttt 47507394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 30674210 - 30674174
Alignment:
Q  139 tcataccaaacaactaaaacaatcatctcactttcca 175  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  30674210 tcataccaaactactaaaacaatcctctcactttcca 30674174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 35395303 - 35395267
Alignment:
Q  197 ttccctaaacattctttccttttactttcttaccttt 233  Q
    |||| |||||||||||||||||||||||||| |||||    
T  35395303 ttccttaaacattctttccttttactttctttccttt 35395267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 13637676 - 13637830
Alignment:
Q  80 atttatgtcgtttcacaaaattataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattca 179  Q
    ||||||||| ||| | |||| || | || |||||||||  | ||| ||| ||||||| || ||||||||||||||||  |||||||||||||||||||||    
T  13637676 atttatgtcatttaataaaaatagatctatctttccttcaactttctttccactttctttgataccaaacaactaaat-aatcatctcactttccattca 13637774  T
Q  180 ctttctactcactatttttccctaaacattctttccttttactttcttacctttca 235  Q
    |||||||| |||| |  |||| | |||| |||||||| ||||| |||| |||||||    
T  13637775 ctttctacccactttcattccttcaacaatctttcctcttactatctttcctttca 13637830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 13738089 - 13738243
Alignment:
Q  80 atttatgtcgtttcacaaaattataactttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattca 179  Q
    ||||||||| ||| | |||| || | || |||||||||  | ||| ||| ||||||| || ||||||||||||||||  |||||||||||||||||||||    
T  13738089 atttatgtcatttaataaaaatagatctatctttccttcaactttctttccactttctttgataccaaacaactaaat-aatcatctcactttccattca 13738187  T
Q  180 ctttctactcactatttttccctaaacattctttccttttactttcttacctttca 235  Q
    |||||||| |||| |  |||| | |||| |||||||| ||||| |||| |||||||    
T  13738188 ctttctacccactttcattccttcaacaatctttcctcttactatctttcctttca 13738243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 232
Target Start/End: Original strand, 39028951 - 39029074
Alignment:
Q  109 tctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacat 208  Q
    |||||||||||| ||| |  |||| |||||||||||||||||||||||| ||| |||  |||||||||| |||||||||||||  |  |||| ||| ||     
T  39028951 tctttcctttcactttctactcacattcattcataccaaacaactaaaataattatcatactttccatttactttctactcacattcattccttaaccaa 39029050  T
Q  209 tctttccttttactttcttacctt 232  Q
    |||||||| |||||||||| ||||    
T  39029051 tctttcctcttactttctttcctt 39029074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 11943138 - 11943076
Alignment:
Q  130 cactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    |||||||| | ||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  11943138 cactttcacttataccaaacaactaaaaaaatcatctaactttccattcaatttctactcact 11943076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 43345764 - 43345664
Alignment:
Q  126 ttttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacattctttccttttactttc 225  Q
    |||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||||  || ||| | ||||| | |||| |||||||| | ||||||    
T  43345764 ttttcactttcactcataccaaaca-ctcaaacaatcatcccactttccattcactttcctcttactttctttcctttaacaatctttcctctcactttc 43345666  T
Q  226 tt 227  Q
    ||    
T  43345665 tt 43345664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 12949414 - 12949353
Alignment:
Q  130 cactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| | || ||||||| |||||    
T  12949414 cactttcattgataccaaacaactaaaa-aatcatctcactttctactctctttctattcact 12949353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 42639791 - 42639674
Alignment:
Q  109 tctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaacat 208  Q
    ||||||||||   ||| ||| ||||||| |||||||||||||  ||||  ||||||||| ||||||||||||||||||||| || |  |||| | ||||     
T  42639791 tctttcctttgtctttctttccactttctttcataccaaacagttaaat-aatcatctccctttccattcactttctactctctttcattccttcaacaa 42639693  T
Q  209 tctttccttttactttctt 227  Q
    |||||||| ||||| ||||    
T  42639692 tctttcctcttactatctt 42639674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 40463957 - 40463912
Alignment:
Q  128 ttcactttcattcataccaaacaactaaaacaatcatctcactttc 173  Q
    ||||||||| || |||||||||||| ||||||||||||||||||||    
T  40463957 ttcactttcttttataccaaacaaccaaaacaatcatctcactttc 40463912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 13903885 - 13903853
Alignment:
Q  141 ataccaaacaactaaaacaatcatctcactttc 173  Q
    ||||||||||||||| |||||||||||||||||    
T  13903885 ataccaaacaactaatacaatcatctcactttc 13903853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 232
Target Start/End: Complemental strand, 17785274 - 17785151
Alignment:
Q  108 ttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaaca 207  Q
    ||||||||| ||  ||| |||||| ||||| || ||||||||||| | || |||||| ||||||||||   |||||||||||||| |  |||| | ||||    
T  17785274 ttctttcctctccctttcttttcattttcactcctaccaaacaaccataa-aatcatatcactttccacaaactttctactcactttcattcctttaaca 17785176  T
Q  208 ttctttccttttactttcttacctt 232  Q
     ||||||||  ||||||||| ||||    
T  17785175 atctttcctcatactttctttcctt 17785151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 41568587 - 41568503
Alignment:
Q  109 tctttcctttcattttattt-tcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    |||||| ||||| | ||||| ||||||||  | ||||||||||||||||| |||||||||| |||||| | | |||||| |||||    
T  41568587 tctttcttttcaatatatttctcactttctcttataccaaacaactaaaataatcatctcattttccacttattttctattcact 41568503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 24129 - 24045
Alignment:
Q  108 ttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 192  Q
    ||||||||| ||||||| |||||||||||| | ||| ||||||||||||| ||||||| || |||||| ||| ||||||||||||    
T  24129 ttctttcctctcattttcttttcactttcactaatatcaaacaactaaaaaaatcatcacattttccactcaatttctactcact 24045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 5833 - 5958
Alignment:
Q  106 ctttctttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcactatttttccctaaa 205  Q
    ||||||||||||||| ||| |||||||| ||| | |||||||||||| |||| |||||||| |||||| | || ||||| | ||||| |  || | ||||    
T  5833 ctttctttcctttcactttcttttcactatcacttataccaaacaac-aaaaaaatcatcttactttctactctctttccattcactttcatttcttaaa 5931  T
Q  206 cattctttccttttactttcttacctt 232  Q
    |||||||||| ||||||||||| ||||    
T  5932 cattctttccatttactttctttcctt 5958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 9000 - 8937
Alignment:
Q  112 ttcctttcattttattttcactttcattcataccaaacaactaaaacaatcatctcactttcca 175  Q
    |||||| || ||||| |||||||||| ||||| ||||| |||||||||||||| ||||||||||    
T  9000 ttccttccactttatattcactttcactcatatcaaactactaaaacaatcatttcactttcca 8937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 33863 - 33813
Alignment:
Q  126 ttttcactttcattcataccaaacaactaaaacaatcatctcactttccat 176  Q
    |||||||||||| |  |||||||||||||||  ||||||||||||||||||    
T  33863 ttttcactttcacttttaccaaacaactaaactaatcatctcactttccat 33813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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