View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20909_low_36 (Length: 226)

Name: NF20909_low_36

Description: NF20909

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20909_low_36

[»] chr7 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 190; E-Value: 1e-103

Query Start/End: Original strand, 17 - 210

Target Start/End: Original strand, 3293793 - 3293986

Alignment:

Q	17	atggaaccaaatgcgacaaaattcgacctaataattctaggagcatcaggtttcacaggcaaatacgttctcaaagaagctctcaaattcctcaacacat	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3293793	atggaaccaaatgccacaaaattcgacctaataattctaggagcatcaggtttcacaggcaaatacgttctcaaagaagctctcaaattcctcaacacat	3293892	T

Q	117	catcctctcctctcacttccatagccatcgcgggccgaagcccaacaaaactagcccaaactcttcaatgggcttcaaagcccaacccaccacc	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3293893	catcctctcctctcacttccatagccatcgcgggccgaagcccaacaaaactagcccaaactcttcaatgggcttcaaagcccaacccaccacc	3293986	T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 32 - 113

Target Start/End: Complemental strand, 37581415 - 37581334

Alignment:

Q	32	acaaaattcgacctaataattctaggagcatcaggtttcacaggcaaatacgttctcaaagaagctctcaaattcctcaaca	113	Q
		\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	37581415	acaacattcgacatcataatcttaggagcatcaggtttcaccggaaaacatgttctcaaagaatctctcaagttcctcaaca	37581334	T

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