View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_low_37 (Length: 210)
Name: NF20909_low_37
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 49041321 - 49041492
Alignment:
| Q |
22 |
agatgtttgaggcacagtagaaaacaataaaacctctgcatgaagctttaatattaagatctgaataaggttggggaagcataaaagcagaatcatcgtg |
121 |
Q |
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| T |
49041321 |
agatgtttgaggcacagtagaaaacaataaaacctctgcatgaagctttaatattaagatctgaataaggttggggaagcataaaagcagaatcatcgtg |
49041420 |
T |
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| Q |
122 |
aatcgatgcttctaaatctatagaacgaatttcagaagttgaagttctgaacaaaattctacggttgtgggt |
193 |
Q |
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| T |
49041421 |
aatcgatgcttctaaatctatagaacgaatttcagaagttgaagttctgaacaaaattctacggttgtgggt |
49041492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 48863146 - 48862979
Alignment:
| Q |
15 |
cataggtagatgtttgaggcacagtagaaaacaataaaacctctgcatgaagctttaatattaagatctgaataaggttggggaagcataaaagcagaat |
114 |
Q |
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| T |
48863146 |
cataggtagatgtttgaagcacagttgaaaacaataaagcctctagatgaagctttaatattaagatctgtataaggttctggaagcataaaagcataat |
48863047 |
T |
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| Q |
115 |
catcgtgaatcgatgcttctaaatctatagaacgaatttcagaagttgaagttctgaacaaaattcta |
182 |
Q |
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| T |
48863046 |
catcgtgaagcgatgcttctaaatctacagaacgaatttcagaaatcggtgttctgaacataattcta |
48862979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 11006226 - 11006275
Alignment:
| Q |
106 |
aagcagaatcatcgtgaatcgatgcttctaaatctatagaacgaatttca |
155 |
Q |
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| T |
11006226 |
aagcagaatcatcgttaagcgatgcttcaaaatctatggatcgaatttca |
11006275 |
T |
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