View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20909_low_8 (Length: 438)
Name: NF20909_low_8
Description: NF20909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20909_low_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 147 - 438
Target Start/End: Complemental strand, 44692758 - 44692467
Alignment:
| Q |
147 |
ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
246 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692758 |
ccaccacttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
44692659 |
T |
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| Q |
247 |
ccccatacatagatttaaccgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatgagtccacacatgcccctccaaatcctccaa |
346 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692658 |
ccccatacatagatttaactgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatgagtccacacatgcccctccaaatcctccaa |
44692559 |
T |
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| Q |
347 |
taaattatttaacaattgttcctcccacacnnnnnnncgccactccaccaccggcccattattcacccccatattcgccaccatagcctctt |
438 |
Q |
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| T |
44692558 |
taaattatttaacaattgttcctcccacacaaaaaaacgccactccaccaccggcccattattcacccccatattcgccaccatagcctctt |
44692467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 44692927 - 44692796
Alignment:
| Q |
22 |
tccaaccaaatccctctgcccaccggacaatgcacaaaaaggtgattagatctttccatttcctcctcgcacaacacacatctaaccgacacctccgggg |
121 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44692927 |
tccaaccaaatccctctagccaccggacaatgcacaaaaaggtgattagatatttccatttcctcctcgcacaacacacatctaaccgaaacctccgggg |
44692828 |
T |
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| Q |
122 |
ggagggcattcctcctacgaagattccaccgc |
153 |
Q |
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| T |
44692827 |
ggagggcattccttctacgaagattccaccgc |
44692796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 353
Target Start/End: Original strand, 34866434 - 34866639
Alignment:
| Q |
147 |
ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
246 |
Q |
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||||| ||||||| || |||||||||||||||||||| ||| |||| |||||||||||||||||| | |||||||||||||| || ||||||| ||| |
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| T |
34866434 |
ccaccacttttgagggggccgggcttttccaaagttggagaaacactctcaactcctccacactccaattgttctccacaatccatctcccttcaaactt |
34866533 |
T |
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| Q |
247 |
ccccatacatagatttaaccgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatgagtccacacatgcccctccaaatcctccaa |
346 |
Q |
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| T |
34866534 |
-cgcatacatagatttcaccgtgaatttcccttcgtcttccatcctccacacccatctgtcttcaccgttagaccacacatgcccctccaaatcttccaa |
34866632 |
T |
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| Q |
347 |
taaatta |
353 |
Q |
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||||||| |
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| T |
34866633 |
taaatta |
34866639 |
T |
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