View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2090_high_1 (Length: 755)
Name: NF2090_high_1
Description: NF2090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2090_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 320 - 743
Target Start/End: Original strand, 40179373 - 40179803
Alignment:
| Q |
320 |
aaacaccaaacataacctagaattgtcatgtgtttggcttcacggtaaggagagacaaaagtgattccaaacgcataaaaatgattttgacatattaatg |
419 |
Q |
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| T |
40179373 |
aaacaccaaacacaacctagaattgtcatgtgtttggcttcacggtaaggagagacaaaagtgattccaaacgcataaaaacaattttgacat------- |
40179465 |
T |
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| Q |
420 |
ccatcattatcaaaaaggaaagcagctatccataaccaaatttaactg--agttcaatttaataacatattaaaa-attcacctgactcctaaccatt-- |
514 |
Q |
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||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
40179466 |
----cattatcgaaaaggaaagcagctataaataaccaaattagactgtgagttcaatttaataatatattaaaatattcacctgactcctaaccatttt |
40179561 |
T |
|
| Q |
515 |
------------ttctccactcaattatttttgcattaatagtttaacctcctatgaaaatgatgccctgatattaagatggatttcttctagcttttct |
602 |
Q |
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| T |
40179562 |
tttccaaacattttctccactcaattatttttgcattaatagtttaacctcctatgaaaatgatgccctgatattaagatggatttcttctagcttttct |
40179661 |
T |
|
| Q |
603 |
tttgccattctcctatccatagactcc--atttcccacagctgcatccttacaatgtccctatccttatcattcaagcaaagagggtggatcaacttgtg |
700 |
Q |
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| T |
40179662 |
tttgccattctcctatccatagactccatatttcccgtagctgcatccgtacaattttccgatccgtatccttcgagcaacgagagtggatcaatttgtg |
40179761 |
T |
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| Q |
701 |
atattcatccagattgatggataaaccataatccttcatctca |
743 |
Q |
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| T |
40179762 |
atattcatccagattgattg-taaaccaaaatccttcatctca |
40179803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 116 - 261
Target Start/End: Original strand, 40179240 - 40179374
Alignment:
| Q |
116 |
aaaaccaatttgatttgtgaacttttctacacataacacattagtagtttcctgtcactttaggaaaaatataaaacttttctttatctctctccaagtt |
215 |
Q |
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| T |
40179240 |
aaaaccaatttgatttgtgaacttttctacacataacacattagtagtttcctatcactttaggaa-----------ttttctttatctctcaccaagtt |
40179328 |
T |
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| Q |
216 |
accataacaaaggtgaacctctattaagcaaatgcatttcaaagaa |
261 |
Q |
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| T |
40179329 |
accataacaaaggtgaacttctattaagcaaatgcatttcaaagaa |
40179374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 504 - 582
Target Start/End: Complemental strand, 41584343 - 41584266
Alignment:
| Q |
504 |
tcctaaccattttctccactcaattatttttgcattaatagtttaacctcctatgaaaatgatgccctgatattaagat |
582 |
Q |
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| T |
41584343 |
tcctaacc-ttttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagat |
41584266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 672 - 743
Target Start/End: Complemental strand, 9160501 - 9160430
Alignment:
| Q |
672 |
ttcaagcaaagagggtggatcaacttgtgatattcatccagattgatggataaaccataatccttcatctca |
743 |
Q |
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| T |
9160501 |
ttcaagcgaagagagtggatcaacttgtgatattcataaagattcatggagaaaccaaaatccttcatctca |
9160430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 659 - 743
Target Start/End: Complemental strand, 9161579 - 9161495
Alignment:
| Q |
659 |
cctatccttatcattcaagcaaagagggtggatcaacttgtgatattcatccagattgatggataaaccataatccttcatctca |
743 |
Q |
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| T |
9161579 |
cctatccatagccttcaagaaaagagagtggaccaacttgtgatattcatcaagattgatggagaaacaaaaatccttcgtctca |
9161495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 9162014 - 9161957
Alignment:
| Q |
267 |
aagcattttaaatcccttaaaaaatagcattccctatctagaaggtttcgtccaaaca |
324 |
Q |
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| T |
9162014 |
aagcattttaaatcccttaaaaaatagtgttccctgtgtagaatgtttcgtccaaaca |
9161957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 511 - 569
Target Start/End: Complemental strand, 9160675 - 9160617
Alignment:
| Q |
511 |
cattttctccactcaattatttttgcattaatagtttaacctcctatgaaaatgatgcc |
569 |
Q |
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| T |
9160675 |
cattttctccattgaaatagttgtgcattaatattttaacctcctatgaaaatgatgcc |
9160617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 634
Target Start/End: Complemental strand, 9161770 - 9161649
Alignment:
| Q |
513 |
ttttctccactcaattatttttgcattaatagtttaacctcctatgaaaatgatgccctgatattaagatggatttcttctagcttttcttttgccattc |
612 |
Q |
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||||||||||| || ||| ||| | ||||| |||||||||||| |||||| |||| || ||||| |||| || || |||||||| |||||||||| || |
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| T |
9161770 |
ttttctccactaaaatatgttttctctaatattttaacctcctacgaaaattatgctctaatattcagattcatctcctctagcttctcttttgccactc |
9161671 |
T |
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| Q |
613 |
tcctatccatagactccatttc |
634 |
Q |
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| T |
9161670 |
tcgaatccatagagttcatttc |
9161649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 415
Target Start/End: Complemental strand, 9161940 - 9161889
Alignment:
| Q |
364 |
gtaaggagagacaaaagtgattccaaacgcataaaaatgattttgacatatt |
415 |
Q |
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| T |
9161940 |
gtaaggagagacaaaagtgatttcagacgtataaatttgattttgacatatt |
9161889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 9129272 - 9129321
Alignment:
| Q |
366 |
aaggagagacaaaagtgattccaaacgcataaaaatgattttgacatatt |
415 |
Q |
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| T |
9129272 |
aaggagagacaaaagtgattccagacgcataaatttgattctaacatatt |
9129321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 9181254 - 9181205
Alignment:
| Q |
366 |
aaggagagacaaaagtgattccaaacgcataaaaatgattttgacatatt |
415 |
Q |
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| T |
9181254 |
aaggagagacaaaagtgattccagacgcataaatttgattctaacatatt |
9181205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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