View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2090_low_2 (Length: 561)
Name: NF2090_low_2
Description: NF2090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2090_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 65 - 544
Target Start/End: Original strand, 40222123 - 40222603
Alignment:
| Q |
65 |
aatagatatcgaaccctgttagcataaaacacaaatttataaaaatgtaagcaatgaatcataatcataccactgtatccagtacatagtcctacttcat |
164 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40222123 |
aatagatatcgaaccctgttagcataaaccacaaatttacaaaaatgtaagcaatgaatcataatcataccactgtagccagtacatagtcctacttcat |
40222222 |
T |
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| Q |
165 |
cttgaaatctcacatttccatagcaaaatctgaagcaacagctaattaattagaaccattttatagcccc-ctcatatataattgtactggacatgcgca |
263 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |
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| T |
40222223 |
cttgaaatgtcacatttccatagcaaaatctgaagcaatagctaattaattagaaccattttatagcccccctcatatataattgtacataacacgcgca |
40222322 |
T |
|
| Q |
264 |
tattgaaccacatatatgacatcaacgtgtaatttattttatactatcaatcaatcataatcgtcagatcatttgacttttaacgaaccttatttccaag |
363 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222323 |
tattgaaccacatatatgacatcaacgtgtaatttcttttatactatcaatcaatcataatcgtcagatcatttgacttttaacgaaccttatttccaag |
40222422 |
T |
|
| Q |
364 |
gtagcccatgatgccggtaccaacgcgagacacttttaaattgccaacgtggttgcgataatcggcgcgtacccacacgcacaagaagataccaaccatt |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40222423 |
gtagcccatgatgccggtaccaacgcgagacacttttaaattgccaacgtggttgcgataatcggcgcgtacccacacgcacaagaagataccgaccatt |
40222522 |
T |
|
| Q |
464 |
tgcttgcttgctactagactaaagcgttgcttttgatttgggatttcattgtttgaggtgtttagagcttgatgaataagg |
544 |
Q |
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| T |
40222523 |
tgcttgcttgctactaggctaaagcgtttcttttgatttgggatttcattgtttgaggtgtttagagcttgatgaataagg |
40222603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 39338417 - 39338380
Alignment:
| Q |
299 |
attttatactatcaatcaatcataatcgtcagatcatt |
336 |
Q |
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|||||||||||||||||||| |||||||||| |||||| |
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| T |
39338417 |
attttatactatcaatcaattataatcgtcaaatcatt |
39338380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 39783511 - 39783568
Alignment:
| Q |
16 |
catcaaataccttgaactactaatacttatagaaagaataacgtggaggaatagatat |
73 |
Q |
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| T |
39783511 |
catcaaataccttgaactactaatacttatagaaagaataacgtggaggaatagatat |
39783568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 4076111 - 4076069
Alignment:
| Q |
294 |
aatttattttatactatcaatcaatcataatcgtcagatcatt |
336 |
Q |
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||||| ||||| |||||||||||||||||||||| |||||||| |
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| T |
4076111 |
aattttttttacactatcaatcaatcataatcgttagatcatt |
4076069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 36886013 - 36886051
Alignment:
| Q |
298 |
tattttatactatcaatcaatcataatcgtcagatcatt |
336 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| |
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| T |
36886013 |
tattttacactatcaatcaatcataatcgtcaggtcatt |
36886051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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