View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2090_low_3 (Length: 425)
Name: NF2090_low_3
Description: NF2090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2090_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 13084952 - 13085343
Alignment:
| Q |
17 |
gaacctaattggtttcagcaaggacgagctccaccttccacttataaagtaagtaatgatgtgaatgttgtatggcaaagaaccacttccattaatgaaa |
116 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13084952 |
gaaccttattggtttcaacaaggacgagctccaccttccacttataaagtaagcaatgatgtgaatggtgtatggcaaagaaccacttccattaatgaaa |
13085051 |
T |
|
| Q |
117 |
ttggattctatccagcagatgctcaacctcaacaagtcttccnnnnnnnnnnn-gtaaattatttcggactttccaaatagatcacacagttgaattcta |
215 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
13085052 |
ttggattctatcgagtagatgctcaacctcaacaagtcttccaaaaaaaaaaaagtaaattatttcggactttccaaatagatcacacagttgcatgcta |
13085151 |
T |
|
| Q |
216 |
gaccaaaaggaaacctagcctataccgcctctttgcctttaagaatacaaacacctgaaacaacaccaccaaattacctgacaagacccactcccaacct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13085152 |
gaccaaaaggaaacctagcctataccgcctctttgcctttaagaatacaaacacctgaaacaacaccaccaaattacctgacaagacccactcccaacct |
13085251 |
T |
|
| Q |
316 |
aaccgcatgcaaatatcgtaccaaactctcgccacaactcaacatgacacaaataaagatccaccggctccaaccctttccacatatcccac |
407 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13085252 |
aaccgcctgcaaatatcgtaccaaactctcgccacaactcaacatgacacaaataaagatccaccggctccaaccctttccacatatcccac |
13085343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 287 - 407
Target Start/End: Original strand, 13013846 - 13013966
Alignment:
| Q |
287 |
aattacctgacaagacccactcccaacctaaccgcatgcaaatatcgtaccaaactctcgccacaactcaacatgacacaaataaagatccaccggctcc |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13013846 |
aattacctgacaagacccactcccaacctaaccgcctgcaaatatcgtaccaaactctcgccacaactcaacatgacacaaataaagatccaccggctcc |
13013945 |
T |
|
| Q |
387 |
aaccctttccacatatcccac |
407 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
13013946 |
aaccctttccacatatcccac |
13013966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 13013796 - 13013847
Alignment:
| Q |
17 |
gaacctaattggtttcagcaaggacgagctccaccttccacttataaagtaa |
68 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13013796 |
gaaccttattggtttcaacaaggacgagctccaccttccacttataaagtaa |
13013847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University