View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2090_low_6 (Length: 252)
Name: NF2090_low_6
Description: NF2090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2090_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 39783511 - 39783735
Alignment:
| Q |
16 |
catcaaataccttgaactactaatacttatagaaagaataacgtggaggaatagatatagaagtacctgttgtttgaaagtttcttcatgctttaacatg |
115 |
Q |
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| T |
39783511 |
catcaaataccttgaactactaatacttatagaaagaataacgtggaggaatagatatagaagtacctgttgtttgaaagtttcttcatgctttaacatg |
39783610 |
T |
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| Q |
116 |
gccatcctcatgtattctttgtcacgtgacctaacaagcttctccatgaatgatcaatttagtttctatagaggctaactagttttgaaccttctttgtc |
215 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39783611 |
gccatcctcatgtattctttgtcacatgacctaacaagcttctccatcaatgatcaatttagtttctatagaggctaactagttttgaaccttctttgtc |
39783710 |
T |
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| Q |
216 |
ccaagtttaccttcatacacaggtt |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
39783711 |
ccaagtttaccttcatacacaggtt |
39783735 |
T |
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