View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20910_low_1 (Length: 569)
Name: NF20910_low_1
Description: NF20910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20910_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 559
Target Start/End: Complemental strand, 37187441 - 37186900
Alignment:
| Q |
18 |
cttatttctcatttttattgattgttatttgaatatcaaattaacatgtgtaataattgtgttgttgaatgtagaaatttggacaagactatttcaaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37187441 |
cttatttctcatttttattgattgttatttgaatatcaaattaacatgtgtaataattgtgttgttgaatgtagaaatttggacaagactatttcaaatt |
37187342 |
T |
|
| Q |
118 |
tggaaatggaactagcttctgctaaagcagctcaagagtctctaaaaagtggtgctcctgtatcagaagatatgaagataagtgaatcaaatggtaggag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37187341 |
tggaaatggaactagcttctgctaaagcagctcaagagtctctaaaaagtggtgctcctgtatcagaagatatgaagataagtgaatcaactggtaggag |
37187242 |
T |
|
| Q |
218 |
aaggtacctaatggttataggaatcaacactgcttttagcagcagaaaaagaagagactccgttcgcgccacttggatgccacaaggttcataattcagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37187241 |
aaggtacctaatggttataggaatcaacactgcttttagcagcagaaaaagaagagactccgttcgcgccacttggatgccacaaggttcataattcagt |
37187142 |
T |
|
| Q |
318 |
catggcttccttattttacacatacgtccgatcatatattaccatcttaccatatcatactattacttatcaaaaattgtttacaatgtgtgataagatc |
417 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37187141 |
catggcttccttattttacacatgcgtccgatcatatattaccatcttaccaaatcatactattacttatcgaaaattgtttacaatgtgtgataagatc |
37187042 |
T |
|
| Q |
418 |
gtaaaatatgattgaagaactatataaaacatgtttgttctatgtgaatggatagtttttaaactgtttttctattgtattcattatattcttgtgcaca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37187041 |
gtaaaatatgattgaagaactatataaaacatgtttgttctatgtgaatggatagtttttaaactgtttttctattgtattcattatattcttgtgcaca |
37186942 |
T |
|
| Q |
518 |
ctttataaactattggccatgatctctgatgttgattctctg |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37186941 |
ctttataaactattggccatgatctctgatgttgattctctg |
37186900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 313
Target Start/End: Original strand, 17123804 - 17124035
Alignment:
| Q |
82 |
ttgaatgtagaaatttggacaagactatttcaaatttggaaatggaactagcttctgctaaagcagctcaagagtctctaaaaagtggtgctcctgtatc |
181 |
Q |
| |
|
||||||||||| |||||| || |||||||||||||| || ||||| | ||| |||| | ||| | ||||||||| || |||||||||||||| || |
|
|
| T |
17123804 |
ttgaatgtagagctttggataaaactatttcaaatttagagatggacttggctgctgcaagagctgttcaagagtcggtacggagtggtgctcctgtttc |
17123903 |
T |
|
| Q |
182 |
agaagatatgaagataagtgaatcaaatggtaggagaaggtacctaatggttataggaatcaacactgcttttagcagcagaaaaagaagagactccgtt |
281 |
Q |
| |
|
||||||||| | || | ||| || | || | ||||| |||||| ||||| |||| || || ||||| ||||||||||| |||||||| ||||| ||| |
|
|
| T |
17123904 |
agaagatataaggacgactgagtcgacgggcaagagaaagtaccttatggtcgtaggtattaatactgcctttagcagcaggaaaagaagggactcggtt |
17124003 |
T |
|
| Q |
282 |
cgcgccacttggatgccacaaggttcataatt |
313 |
Q |
| |
|
|| || || ||| ||||||||||||||||||| |
|
|
| T |
17124004 |
cgagctacctggttgccacaaggttcataatt |
17124035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 3724173 - 3724099
Alignment:
| Q |
231 |
gttataggaatcaacactgcttttagcagcagaaaaagaagagactccgttcgcgccacttggatgccacaaggt |
305 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||| ||| ||||||| || ||||| | |||||||||||||||||| |
|
|
| T |
3724173 |
gttatagggatcaatacagcttttagtagcaggaaacgaagagattctgttcgaggaacttggatgccacaaggt |
3724099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University