View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20910_low_4 (Length: 254)
Name: NF20910_low_4
Description: NF20910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20910_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 19418581 - 19418425
Alignment:
| Q |
1 |
aaagtatattttatggaagagaataaattaaatatgcttagagaccaatagctataggacatcaaaatgcctgcttgtaggataaacttttacctttcta |
100 |
Q |
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| T |
19418581 |
aaagtatattttatggaagagaataaattaaatatgcttagagaccaatagctataggacatcaaaatgcctgcttgtaggataaacttttacctttcta |
19418482 |
T |
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| Q |
101 |
agcatatcctcacatatacaaacctggttttagacattttaaatacaaattttaaga |
157 |
Q |
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| T |
19418481 |
agcatatcctcacatatacaaacctggttttagacattttaaatgcaaattttaaga |
19418425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 19425462 - 19425333
Alignment:
| Q |
15 |
ggaagagaataaattaaatatgcttagagaccaa---tagctataggacatcaaaatgcctgcttgtaggataaacttttacctttctaagcatatcctc |
111 |
Q |
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|||||| ||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
19425462 |
ggaagaaaataaattaaatatgcttagagaacaacaatagctataagacaccaaaatgcctgctcgtaggataaacttttacctttctaaccatatcctc |
19425363 |
T |
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| Q |
112 |
acatatacaaacctggttttagacatttta |
141 |
Q |
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| T |
19425362 |
acatataaaaaccaggttttagacaattta |
19425333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 19418361 - 19418268
Alignment:
| Q |
152 |
ttaagaaacaaattgtgtttgaattattggttaaaaaagacaaatcgtgttcgaatattgatt-aaaacaatcattggtcaggttttattcatct |
245 |
Q |
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| T |
19418361 |
ttaagaaacaaattgtgtttgaat-attggttaaaaaagacaaatcgtgttcgaatattgattaaaaacaatcattggtcaggttttattcatct |
19418268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 19425247 - 19425167
Alignment:
| Q |
160 |
caaattgtgtttgaattattggttaaaaaa-gacaaatcgtgttcgaatattgattaaaacaatcattggtcaggttttatt |
240 |
Q |
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||||||| |||||||| |||||| |||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
19425247 |
caaattgagtttgaat-attggtcaaaaaaagacaaattgtgttcgaatattggttaaaacaatcattggtcgggttttatt |
19425167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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