View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20911_high_3 (Length: 416)
Name: NF20911_high_3
Description: NF20911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20911_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 30077741 - 30077344
Alignment:
| Q |
1 |
gtgaattttctttttcctcgattagtataatttggagtttgattgcgagataaatatagtcttgttgagaattattttagttagagatcaaactagggta |
100 |
Q |
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| T |
30077741 |
gtgaattttctttttcctcgattaggataatttggagtttgattgcgagataaatatagtct-gttgagaattattttagttagagatcaaactagggta |
30077643 |
T |
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| Q |
101 |
atattttaatgattaggtttaatatggggaagaatgatatttctatttggttttatatatgcaagggaaatgggaaggnnnnnnnnttgttagtgttagg |
200 |
Q |
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| T |
30077642 |
atattttaatgattaggtttaatatggggaagaatgatatttctatttggttttatatatgcaag---aatgggaaggaaaaaaa-ttgttagtgttagg |
30077547 |
T |
|
| Q |
201 |
tgtttaattatatgtaatttttcatagggatgtgttgattagtatttcatatataagatcaattcaattcaagtaaatgttgttttctactttatgaaat |
300 |
Q |
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| T |
30077546 |
tgtttaattatatgtaatttttcatagggatgtgttgattagtatttcatatataagatcaattcaattcaagtaaatgttgttttctactttatgaaat |
30077447 |
T |
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| Q |
301 |
tgttcgttta-ttgttgtacaaaaactttgtctaacaccactatagcgacattagtgtagttcatgggagtgagattattcttactaccccaattgccct |
399 |
Q |
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| T |
30077446 |
tgttcgtttatttgttgtacaaattttttgtctaacaccactatagcgacattagtgtagttcatgggagtgagattattcttactaccccaattgccct |
30077347 |
T |
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