View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20911_high_4 (Length: 362)
Name: NF20911_high_4
Description: NF20911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20911_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 33 - 346
Target Start/End: Original strand, 30946189 - 30946505
Alignment:
| Q |
33 |
tttatcgaccttctattgttagttatgttatccaaaatcgagtagtgcttgactctttggcgttcaacttgaatttccatacataatcctctgtcaatgt |
132 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30946189 |
tttatcgaccttctattgttagttatgttatccagaatcaagtagtgcttgactctttggcgttcaacttgaatttccatacataatcctctgtcaatgt |
30946288 |
T |
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| Q |
133 |
aattgttccattggagaagacttaagaaatcacacaaggtctaaaccatcttgaatttaattttct-----------ttagtttggagttacagagtaag |
221 |
Q |
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| T |
30946289 |
aattgttccattggagaagacttaagaaa--------ggtctaaaccatcttgaatttaattttctaggaaatagctttagtttggagttacagagtaag |
30946380 |
T |
|
| Q |
222 |
actttctcccctacttggaattccnnnnnnngaatattggcatcatgccatttattaaccttggacttgtaacttctgcattttcacaagtaataagact |
321 |
Q |
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| T |
30946381 |
actttctcccctacttggaattcctttttttgaatattggcatcatgccatttattaaccttggacttgtaacttctgcattttcataagtaataagact |
30946480 |
T |
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| Q |
322 |
attttcttctaattcatggagttgc |
346 |
Q |
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||||||||||||||||||||||||| |
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| T |
30946481 |
attttcttctaattcatggagttgc |
30946505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 30952066 - 30952410
Alignment:
| Q |
13 |
ttgttgaagcattttcaaaatttatcgaccttctattgttagttatgttatccaaaatcgagtagtgcttgactctttggcgttcaacttgaatttccat |
112 |
Q |
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|||||||||| | | ||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||| ||||||||||||| |
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| T |
30952066 |
ttgttgaagcttctccaaaatttatcgaccttctattgttggttatgttatccagaatcaagtagtgcttgactctctggcgttcaccttgaatttccat |
30952165 |
T |
|
| Q |
113 |
acataatcctctgtcaatgtaattgttccattggagaagacttaagaaatcacacaaggtctaaaccatcttgaatttaatttt-----------cttta |
201 |
Q |
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|||||||||||| |||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
30952166 |
acataatcctctttcaatgtaattgttccataggggaagacttgagaaatcacaaaaggtctaaaccatcttgaatttaattttttaggaaataggttta |
30952265 |
T |
|
| Q |
202 |
gtttggagttacagagtaagactttctcccctacttggaattccnnnnnnngaatattggcatcatgccatttattaaccttggacttgt-aacttctgc |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
30952266 |
gtttggagttacagagtaagactttctcccccacttggaattccttttttcgaatcttggcatcatgccatttcctaaccttggacttgtaaacttctaa |
30952365 |
T |
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| Q |
301 |
attttcacaagtaataagactattttcttctaattcatggagttgc |
346 |
Q |
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||||| | ||||||||||||||||||||||||||| |||||||||| |
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| T |
30952366 |
atttt-ataagtaataagactattttcttctaatttatggagttgc |
30952410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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