View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20911_high_8 (Length: 280)
Name: NF20911_high_8
Description: NF20911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20911_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 34976869 - 34977119
Alignment:
| Q |
22 |
atggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagct |
121 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976869 |
atggaatctttacaaacattgaccggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagct |
34976968 |
T |
|
| Q |
122 |
tgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaa |
221 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976969 |
tgttttatgtaagggcagaacattcaagcgctctatattcctcactgaatgagatgaaacacttggagaatttatacattgtgtcaggaatgggagacaa |
34977068 |
T |
|
| Q |
222 |
tatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34977069 |
tatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
34977119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 34983916 - 34984166
Alignment:
| Q |
22 |
atggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagct |
121 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| || |
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| T |
34983916 |
atggaatctctacaaacattgagtggagtgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaagacagttaaggaagttgacct |
34984015 |
T |
|
| Q |
122 |
tgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaa |
221 |
Q |
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||||||||| | ||||||||||| |||||| ||||||||||| ||||||||||||||||||| || || |||| ||||||||||||| || ||| |
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| T |
34984016 |
tgttttatgcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttagaaaaattatgcattgtgtcaggatgggaagatgg |
34984115 |
T |
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| Q |
222 |
tatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
272 |
Q |
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| ||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34984116 |
ttcttattatgatgtcattgatttacatttggtttcgcctccacctatgct |
34984166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 22 - 272
Target Start/End: Complemental strand, 2304456 - 2304206
Alignment:
| Q |
22 |
atggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagct |
121 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | || |||||||||||||| |||| |
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| T |
2304456 |
atggaatctctacaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagttaaggaagtttagct |
2304357 |
T |
|
| Q |
122 |
tgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaa |
221 |
Q |
| |
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||||| ||||| | ||||||||||| |||| |||||||||| |||||||||||||||||| |||||| |||| |||| ||||| ||| ||||| | |
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| T |
2304356 |
tgtttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattatgtcaagaagcggagatga |
2304257 |
T |
|
| Q |
222 |
tatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
272 |
Q |
| |
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| | ||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
2304256 |
tggggtttttgatgtcattgatttacatttggtttcgcttccacctatgct |
2304206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 34990745 - 34990930
Alignment:
| Q |
22 |
atggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagct |
121 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||| |||||||||||| | || | ||||||||||||||||| |
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| T |
34990745 |
atggaatctctacaaacgttgagtggagtgaaaattggtaagggtggaatagagttgattaaggagttgggaaagctaaggcggttaaggaagttgagct |
34990844 |
T |
|
| Q |
122 |
tgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtca |
207 |
Q |
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|| | ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
34990845 |
tgaatgatgtgagggcaagacattcaagcgctttatcttcctcactgaatgagatgcgacacttggagaaattacgcattgtgtca |
34990930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 40581426 - 40581676
Alignment:
| Q |
22 |
atggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagct |
121 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| ||||| | || |||||||||||||||| || |
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| T |
40581426 |
atggaatctctacaaacattgagtgcagtgaaaattggtaagggtggaatagagttaattaaagagttgagaaagctaaggcagttaaggaagttgaact |
40581525 |
T |
|
| Q |
122 |
tgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaa |
221 |
Q |
| |
|
||||||||| | ||||||||||| |||||| ||||||||||| |||||||||||||||||||| | || ||| |||||| |||||| |||| | | |
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| T |
40581526 |
tgttttatgcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttgaaaaaattaagcattgtatcaggatggggacaaga |
40581625 |
T |
|
| Q |
222 |
tatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
272 |
Q |
| |
|
| | | || |||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
40581626 |
ttttgtttatgatgtcattgatttacatttggtttcgcctccacctatgct |
40581676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 191
Target Start/End: Complemental strand, 22619818 - 22619689
Alignment:
| Q |
62 |
aggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttc |
161 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || ||||||||||| ||| | ||| || ||| ||||||| ||||||| ||||||| |
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| T |
22619818 |
aggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttc |
22619719 |
T |
|
| Q |
162 |
ctcactgaatgagatgcgacacttggagaa |
191 |
Q |
| |
|
| | |||||||| |||||||||||||||| |
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|
| T |
22619718 |
cgtattgaatgagctgcgacacttggagaa |
22619689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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