View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20911_low_1 (Length: 461)
Name: NF20911_low_1
Description: NF20911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20911_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Original strand, 29525122 - 29525547
Alignment:
| Q |
17 |
gttctgatccagaggttggtaatacaggtcaaccagatgttgcccatgaaagtcgtgttattattgattcatatctagattaccaacaagaggtatctag |
116 |
Q |
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| T |
29525122 |
gttctgatccagaggttggtaatacagttcaaccagatgttgcccatgaaagtcgtgttattattgattcatatctagataaccaacaagaggtatctag |
29525221 |
T |
|
| Q |
117 |
tgaaggtcaagttattgacagttcagttaccataccagaagttgctagttgtggaagtgatcaaggtgtagtagacattatacttgaagaaaattcagta |
216 |
Q |
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| T |
29525222 |
tgaaggtcaagttattgacagttcagttaccataccagaagttgctagttgtggaagtgatcaaggtgtagtagacattatacttgaagaaaattcagta |
29525321 |
T |
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| Q |
217 |
aatgttgtagcatcgtaaaggannnnnnnaatccatatatatggacaatggcaataacatcacaggaactcggaaacaatttcaacactgtacacccaac |
316 |
Q |
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| T |
29525322 |
aatgttgtagcatcgtaaaggatttgtttaatccatatatatggacaatggcaataacatcacaggaactcggaaacaatttcaacactgtacacccaac |
29525421 |
T |
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| Q |
317 |
accgtataaaataacaatttcaatgtgttcggattccgaggaacaaatgaattaatataaaatcagaaaccgtatagaatgtgcaagaaatacaatgtgt |
416 |
Q |
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|||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29525422 |
accgtatagaataacaatttcaatttgttcggattacgaggaaaaaatgaattaatataaaatcagaaaccgtatagaatgtgcaagaaatacaatgtgt |
29525521 |
T |
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| Q |
417 |
ctgatgacgaattctgagttctaaaa |
442 |
Q |
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| T |
29525522 |
ctgatgacgaattctgagttctaaaa |
29525547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 29612976 - 29613137
Alignment:
| Q |
73 |
gttattattgattcatatctagattaccaacaagaggtatctagtgaaggtcaagttattgacag---ttcagttaccataccagaagttgctagttgtg |
169 |
Q |
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||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||| |||| || | ||||| | ||||| |||| ||||||||| || |
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| T |
29612976 |
gttattattgagtcatatccagattgccaaaaagaggtatctagtgaaggtcaagatattcactgttcttcagattccataacagaggttgctagtgatg |
29613075 |
T |
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| Q |
170 |
gaagtgatcaaggtgtagtagacattatacttgaagaaaattcagtaaatgttgtagcatcgtaa |
234 |
Q |
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| T |
29613076 |
gaggtgatctacat---gtagacattatacatgaaacaaattctataagtgttgtagcattgtaa |
29613137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 29612911 - 29612952
Alignment:
| Q |
17 |
gttctgatccagaggttggtaatacaggtcaaccagatgttg |
58 |
Q |
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| T |
29612911 |
gttctgatccagaggttggtaatgtaggtcaaccagatgttg |
29612952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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