View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20911_low_12 (Length: 253)
Name: NF20911_low_12
Description: NF20911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20911_low_12 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 31560894 - 31560650
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31560894 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
31560795 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31560794 |
taacacgaacaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcccaactaaatcttttgaaacacatgaagattt |
31560695 |
T |
|
| Q |
201 |
gtacttcaatatattcattatcgtccgaacaatctttttcatctc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31560694 |
gtacttcaatatattcattatcgtccgaacaatctttttcatctc |
31560650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 31567213 - 31566969
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31567213 |
tcatcaatataacaagatgcactaaatcgatgagatatttggccatataaagtctcagcaagggctgtcttccctattccccccattccacaaattccta |
31567114 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31567113 |
tagcacgaacaccatcaatcgagtccaaaagcaaatgattttgtaacgcttctataggagaatcaatcccaactaaatcttttgaaacacatgaagattt |
31567014 |
T |
|
| Q |
201 |
gtacttcaatatattcattatcgtccgaacaatctttttcatctc |
245 |
Q |
| |
|
| ||| ||||||||||||||| || || |||||||||| ||||| |
|
|
| T |
31567013 |
gcactccaatatattcattattgtttgagcaatctttttaatctc |
31566969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 33402609 - 33402853
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
33402609 |
tcatcaatgaaacaggatgcactaaatcgatgagagatttggccatataaattcatagcaagggttgtcttccctattcctcccattccacaaattctta |
33402708 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
|| ||||| |||||||| || ||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33402709 |
tagcacgaacaccatcaaccaagtccaaaaccaaatgattttttaatgcttctataggagaatcaatcccaactaaatcttttgaaacacatgaagattt |
33402808 |
T |
|
| Q |
201 |
gtacttcaatatattcattatcgtccgaacaatctttttcatctc |
245 |
Q |
| |
|
| ||| |||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
33402809 |
gcactccaatatattcattatcttttgaacaatctttttaatctc |
33402853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 33390067 - 33390313
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390067 |
tcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattccta |
33390166 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
|| || || |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || |
|
|
| T |
33390167 |
tagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaatt |
33390266 |
T |
|
| Q |
201 |
gtacttcaatatattcattatcgtccgaacaatctttttcatctcac |
247 |
Q |
| |
|
| ||| |||||||||||||||| | ||||||||||||| ||||||| |
|
|
| T |
33390267 |
gcactccaatatattcattatcctttgaacaatctttttaatctcac |
33390313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9168769 - 9169006
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9168769 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggtcatataaaaccattgcaagagttgtcttccctattcctcccattccacaaattccta |
9168868 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9168869 |
tagcacgaacaccatcaattgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcccaactaaatcttttgaaacacatgaagattt |
9168968 |
T |
|
| Q |
201 |
gtacttcaatatattcattatcgtccgaacaatcttttt |
239 |
Q |
| |
|
| || || |||| ||||||||| | | ||||||||||| |
|
|
| T |
9168969 |
gcac-tccatatgttcattatcttttgtacaatcttttt |
9169006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 33642687 - 33642443
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||| |||| | ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33642687 |
tcatcaataaaacatgatgcactaaatcgatgagatatttggtcatataaagccgtagcaagggttgtcttccctattcctcccattccacaaattccta |
33642588 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
|| ||||| |||||||| | ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| | |||| || |
|
|
| T |
33642587 |
tagcacgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttttataggagaatcaatcccaactaaatcttttgaaacacttaaagactt |
33642488 |
T |
|
| Q |
201 |
gtacttcaatatattcattatcgtccgaacaatctttttcatctc |
245 |
Q |
| |
|
| ||| |||||||| |||||| | ||||||||||||| ||||| |
|
|
| T |
33642487 |
gcactctaatatattgattatcttttgaacaatctttttaatctc |
33642443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 33306481 - 33306719
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33306481 |
tcatcaatatagcaggatgcactaaatcgatgagatatttggtcatataaagccatagcaagggttgtcttccctattcctcccattccagaaattccta |
33306580 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
|| ||| | ||| |||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
33306581 |
tagcacaaacacaatcaaccgagtccaaaagcaaatgattttttaatgcttctataggagaatcaatcccaactaaatcttttgaaatatatgaagattt |
33306680 |
T |
|
| Q |
201 |
gtacttcaatatattcattatcgtccgaacaatcttttt |
239 |
Q |
| |
|
| ||| ||||||| |||||||| | ||||||||||||| |
|
|
| T |
33306681 |
gcactccaatatactcattatcttttgaacaatcttttt |
33306719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 33273787 - 33274031
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33273787 |
tcatctataaaacaggatgcactaaatcgatgagatatttgatcatataaagccatagcaagggttgtcttccctattcctcccattccacaaattccta |
33273886 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
|| ||||| ||| ||| ||||||||||||| ||||||||||||||| | |||| | |||||| |||| ||||||||||||||||| |||||||||||| |
|
|
| T |
33273887 |
tagcacgaacactgtcaaccgagtccaaaagtaaatgattttgtaatccgtctaaacgagaatctatcccaactaaatcttttgaaaaacatgaagattt |
33273986 |
T |
|
| Q |
201 |
gtacttcaatatattcattatcgtccgaacaatctttttcatctc |
245 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
33273987 |
gtacttcaatatattcaagatcgtttgaacaatctttttaatctc |
33274031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 235
Target Start/End: Original strand, 33059561 - 33059792
Alignment:
| Q |
4 |
tcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattcctataa |
103 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33059561 |
tcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatag |
33059660 |
T |
|
| Q |
104 |
cacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagatttgta |
203 |
Q |
| |
|
||||| |||||||| | |||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||| | |
|
|
| T |
33059661 |
cacgaacaccatcaactgagttcaaaagcaaatgattttgtaatgcttgtataggagaatcaatcccaactaaatcttttgaaacacatgaatatttgca |
33059760 |
T |
|
| Q |
204 |
cttcaatatattcattatcgtccgaacaatct |
235 |
Q |
| |
|
| ||||||||| |||||| | ||||||||| |
|
|
| T |
33059761 |
ttccaatatattgattatcttttgaacaatct |
33059792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 33287540 - 33287770
Alignment:
| Q |
4 |
tcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattcctataa |
103 |
Q |
| |
|
||||||||||| ||| ||||||||||||| |||||||| |||| |||| ||||| ||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33287540 |
tcaataaaacaagatccactaaatcgatgggatatttgatcatataaagccatagaaagggttgttttccctattcctcccattccacaaattcctattg |
33287639 |
T |
|
| Q |
104 |
cacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagatttgta |
203 |
Q |
| |
|
||||| | |||||| |||| |||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| | |
|
|
| T |
33287640 |
cacgaactccatcaaccgaatccaaatgcaaatgactttgtaaggcttctataggagaattaatcgcaactaaatcttttgaaacccatgaagatttgca |
33287739 |
T |
|
| Q |
204 |
cttcaatatattcattatcgtccgaacaatc |
234 |
Q |
| |
|
|| ||||||||||||||||||| |||||||| |
|
|
| T |
33287740 |
ctccaatatattcattatcgtctgaacaatc |
33287770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33360074 - 33360295
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||||||| | |||||||||||| | ||||| ||||||||||| |||||| ||||||||| ||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
33360074 |
tcatcaataaaaaaagatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattccta |
33360173 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
|| ||||| |||||||| |||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| |||| |
|
|
| T |
33360174 |
tagcacgaacaccatcaaccgagttcaaaagcaaatgattttgtaatgcttgtataggagaatcaatctcaactaaatcttttgaaacacatgaatattt |
33360273 |
T |
|
| Q |
201 |
gtacttcaatatattcattatc |
222 |
Q |
| |
|
| | | ||||||||| |||||| |
|
|
| T |
33360274 |
gcattccaatatattgattatc |
33360295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 33411954 - 33412192
Alignment:
| Q |
7 |
ataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattcctataacac |
106 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
33411954 |
ataaaacaagatgcactaaattgatgagatatctggccatataaagtcatagcaagggttgtctttcctattccgcccattccacaaattccaatagcac |
33412053 |
T |
|
| Q |
107 |
gagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagatttgtactt |
206 |
Q |
| |
|
| |||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||| |||||||||| | | |
|
|
| T |
33412054 |
aaacaccatcaaccgagtccaaaagtaaatgattttgtaatacttctatccgagaatttatcccaactaaatcttttgaaatgaatgaagatttacaatc |
33412153 |
T |
|
| Q |
207 |
caatatattcattatcgtccgaacaatctttttcatctc |
245 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
33412154 |
caatatattcattatattttgaacaatctttttaatctc |
33412192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 33264644 - 33264888
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| | ||||||||||| ||| |||||||||||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
33264644 |
tcatcaatgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattccta |
33264743 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
|| ||||| |||||||| || ||||||||| |||||||||||||||||||||| | |||||| ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
33264744 |
tagcacgaacaccatcaaccatgtccaaaaggaaatgattttgtaatgcttctaaacgagaatctatcgcaactaagtcttttgaaacacatgaagattt |
33264843 |
T |
|
| Q |
201 |
gtacttcaatatattcattatcgtccgaacaatctttttcatctc |
245 |
Q |
| |
|
| | | |||| || |||||||| | ||||||||||||| ||||| |
|
|
| T |
33264844 |
gcattccaatgtactcattatcttttgaacaatctttttaatctc |
33264888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 13609166 - 13609093
Alignment:
| Q |
56 |
tagcaagggctgtcttccctattcctcccattccacaaattcctataacacgagcaccatcatccgagtccaaa |
129 |
Q |
| |
|
||||||| | |||||| |||||||| |||||||||||||| |||| ||| ||| || ||||||| ||||||||| |
|
|
| T |
13609166 |
tagcaagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa |
13609093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 17438913 - 17438669
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||| ||||||||||| ||| || |||||||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
17438913 |
tcatcaatgaaacaagatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattccta |
17438814 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
17438813 |
tagcacgaacaccatcaaccgagtccaaaagtaaatgattttttaatgcttctatacgagaatttatcccaactaaatcttttgaattacatgaagattt |
17438714 |
T |
|
| Q |
201 |
gtacttcaatatattcattatcgtccgaacaatctttttcatctc |
245 |
Q |
| |
|
| | | |||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
17438713 |
gcattccaatatattcattatcttttgaacaatctttttaatctc |
17438669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8755 - 8992
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| | ||||||||||| ||| |||||||||||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
8755 |
tcatcaatgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattccta |
8854 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
|||||||| |||||||| |||| | |||||| || |||| || |||||||||| || ||||||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
8855 |
taacacgaacaccatcaaccgaattcaaaagtaactgatgttttaatgcttctgtacgagaatttatcccaactaaatcttttgaaacgaatgaagattt |
8954 |
T |
|
| Q |
201 |
gtacttcaatatattcattatcgtccgaacaatctttt |
238 |
Q |
| |
|
| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
8955 |
gcacttcaatatattcaagatcgtttgaacaatctttt |
8992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 3 - 231
Alignment:
| Q |
10 |
aaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattcctataacacgag |
109 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||||||| ||| |||||||||||| ||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
3 |
aaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctataacacgaa |
102 |
T |
|
| Q |
110 |
caccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagatttgtacttcaa |
209 |
Q |
| |
|
|||||||| |||| | |||||| || |||| || |||||||||| || ||||||| |||| |||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
103 |
caccatcaaccgaattcaaaagtaactgatgttttaatgcttctgtacgagaatttatcccaactaaatcttttgaaacgaatgaagatttgcacttcaa |
202 |
T |
|
| Q |
210 |
tatattcattatcgtccgaacaatctttt |
238 |
Q |
| |
|
|||||||| ||||| |||||||||||| |
|
|
| T |
203 |
tatattcaagatcgtttgaacaatctttt |
231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 31497012 - 31496768
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| ||| |||| ||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
31497012 |
tcatcaataaaacatcatgcatcaaattgattagagattttagcatacaaagcagtagcaagggtagtcttccctattcctcccatcccacaaattccta |
31496913 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagattt |
200 |
Q |
| |
|
| |||||| || ||| | ||||||||||||| ||| | |||| |||| || ||| |||| | |||| ||||||||| |||||||||||| |||||| |
|
|
| T |
31496912 |
tgacacgaccatcattaaccgagtccaaaagtaaaagcttttctaatttttgcatatgagagtccatcccaactaaatcatttgaaacacatatagattt |
31496813 |
T |
|
| Q |
201 |
gtacttcaatatattcattatcgtccgaacaatctttttcatctc |
245 |
Q |
| |
|
| | | ||| |||| ||||||| | ||||||| ||||| ||||| |
|
|
| T |
31496812 |
gcaatccaaaatatccattatcctttgaacaatttttttaatctc |
31496768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 31477059 - 31476862
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||||| ||| |||| | | ||| |||||| ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
31477059 |
tcatcaataaaacagcatgcaccaaattgatgagaaattctatcatatagaaccatgccaagggttgtcttccctattccacccatcccacaaattccta |
31476960 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcctaactaaatcttttgaaacacatgaagat |
198 |
Q |
| |
|
|||| || || ||||| | ||||||||||| ||| | |||| |||| ||| | ||||||||| |||| ||||||||| |||||| ||| ||||||| |
|
|
| T |
31476959 |
caacatgaacatcatcaacagagtccaaaagtaaaagcttttctaattcttgtctaggagaatccatcccaactaaatcgtttgaagcacttgaagat |
31476862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 31019783 - 31019913
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||| ||||| ||||| |||| |||| || | ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
31019783 |
tcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattccta |
31019882 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaag |
131 |
Q |
| |
|
||| ||| || ||||| ||||||||||||| |
|
|
| T |
31019883 |
caacccgaacatcatcaaccgagtccaaaag |
31019913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 31150386 - 31150514
Alignment:
| Q |
56 |
tagcaagggctgtcttccctattcctcccattccacaaattcctataacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctat |
155 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||| ||||||||||||| |||||| || ||||| |||||||||||| ||||| |||| |||| | | || |
|
|
| T |
31150386 |
tagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtag |
31150485 |
T |
|
| Q |
156 |
aggagaattaatcctaactaaatcttttg |
184 |
Q |
| |
|
|||||||| |||| ||||||| ||||| |
|
|
| T |
31150486 |
aggagaatgcatcccgactaaattttttg |
31150514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 31159297 - 31159433
Alignment:
| Q |
66 |
tgtcttccctattcctcccattccacaaattcctataacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaatta |
165 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| ||| ||| || ||||| | ||||||||||| || ||||| || | |||||||||| |||| |
|
|
| T |
31159297 |
tgtcttccctattccacccatcccacaaattcctacaacccgaacatcatcaacggagtccaaaagtaatagatttgctactttttctataggataattt |
31159396 |
T |
|
| Q |
166 |
atcctaactaaatcttttgaaacacatgaagatttgt |
202 |
Q |
| |
|
|| | |||||| ||||||| || ||||||| |||||| |
|
|
| T |
31159397 |
attccaactaattcttttggaagacatgaaaatttgt |
31159433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 31029664 - 31029794
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||| ||||| ||||| |||| ||| || | ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
31029664 |
tcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagtcagagttgtcttccctattccacccatcccacaaattccta |
31029763 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaag |
131 |
Q |
| |
|
||| ||| || ||||| ||||||||||||| |
|
|
| T |
31029764 |
caacccgaacatcatcaaccgagtccaaaag |
31029794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 31502123 - 31501988
Alignment:
| Q |
59 |
caagggctgtcttccctattcctcccattccacaaattcctataacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctatagg |
158 |
Q |
| |
|
|||||| ||||||||||||||| ||||| ||||| ||||||| | | || || ||||| | |||||||| || ||| | |||| |||||||| |||| | |
|
|
| T |
31502123 |
caagggttgtcttccctattccacccatcccacagattcctacagcttgaacatcatcaacagagtccaagagtaaaagtttttctaatgcttgtatatg |
31502024 |
T |
|
| Q |
159 |
agaattaatcctaactaaatcttttgaaacacatga |
194 |
Q |
| |
|
|||| ||| | ||||| ||||||||||||||||| |
|
|
| T |
31502023 |
agaaacaattccaactatgtcttttgaaacacatga |
31501988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 31489763 - 31489633
Alignment:
| Q |
1 |
tcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattccta |
100 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||| ||||| ||||| |||| |||| || | ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
31489763 |
tcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattccta |
31489664 |
T |
|
| Q |
101 |
taacacgagcaccatcatccgagtccaaaag |
131 |
Q |
| |
|
||| ||| || ||||| ||||||||||| |
|
|
| T |
31489663 |
caacccgaacatcatcaatggagtccaaaag |
31489633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 31161692 - 31161787
Alignment:
| Q |
68 |
tcttccctattcctcccattccacaaattcctataacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaat |
163 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||| ||| || || ||||| |||| |||||||| ||||| |||| |||| ||||| || |||||| |
|
|
| T |
31161692 |
tcttccctattccacccatcccacaaactcctacaacccgcacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaat |
31161787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 31245104 - 31245019
Alignment:
| Q |
67 |
gtcttccctattcctcccattccacaaattcctataacacgagcaccatcatccgagtccaaaagcaaatgattttgtaatgcttc |
152 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| || ||| || ||||||| ||||||| || |||| | |||| |||| |||| |
|
|
| T |
31245104 |
gtcttccctattccacccattccacaaatccctaccactcgaacatcatcatctgagtccataatcaaaagcttttctaattcttc |
31245019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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