View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20911_low_16 (Length: 218)

Name: NF20911_low_16
Description: NF20911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20911_low_16
NF20911_low_16
[»] chr4 (5 HSPs)
chr4 (100-203)||(8162229-8162332)
chr4 (105-203)||(7244019-7244117)
chr4 (107-201)||(7324243-7324337)
chr4 (118-203)||(7218513-7218598)
chr4 (118-203)||(7317465-7317550)
[»] chr7 (2 HSPs)
chr7 (1-33)||(42617905-42617937)
chr7 (1-29)||(22081558-22081586)
[»] scaffold0771 (1 HSPs)
scaffold0771 (1-31)||(1235-1265)
[»] chr3 (1 HSPs)
chr3 (1-31)||(13949095-13949125)
[»] chr2 (1 HSPs)
chr2 (1-34)||(28226144-28226177)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-33)||(222189-222221)
[»] chr8 (2 HSPs)
chr8 (1-33)||(15229925-15229957)
chr8 (1-33)||(44664908-44664940)
[»] chr6 (2 HSPs)
chr6 (1-29)||(6517501-6517529)
chr6 (1-33)||(7905237-7905269)
[»] chr1 (2 HSPs)
chr1 (1-29)||(37929598-37929626)
chr1 (1-29)||(49955345-49955373)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 8162332 - 8162229
Alignment:
Q  100 aactataatgactttaaatgtaaagttaaataaattcttactgataacaggaatctgaagttgtagggaaacatgttggacaaagtcacaggcatccatg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8162332 aactataatgactttaaatgtaaagttaaataaattcttactgatagcaggaatctgaagttgtagggaaacatgttggacaaagtcacaggcatccatg 8162233  T
Q  200 tttg 203  Q
    ||||    
T  8162232 tttg 8162229  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 7244117 - 7244019
Alignment:
Q  105 taatgactttaaatgtaaagttaaataaattcttactgataacaggaatctgaagttgtagggaaacatgttggacaaagtcacaggcatccatgtttg 203  Q
    |||||| ||| | ||||||||| |||||||||||||| || |||||||| |  |||||||||| ||||||||||||||||||| | |||||||||||||    
T  7244117 taatgaattttagtgtaaagttgaataaattcttactaatgacaggaatgttgagttgtagggtaacatgttggacaaagtcataagcatccatgtttg 7244019  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 7324243 - 7324337
Alignment:
Q  107 atgactttaaatgtaaagttaaataaattcttactgataacaggaatctgaagttgtagggaaacatgttggacaaagtcacaggcatccatgtt 201  Q
    |||||||| ||  ||||||| || ||||||||||| ||||||||||| |  |||||||||| | ||| ||||||||||||| || ||||||||||    
T  7324243 atgactttcaacttaaagttgaagaaattcttactaataacaggaatgttgagttgtagggtagcattttggacaaagtcatagacatccatgtt 7324337  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 7218598 - 7218513
Alignment:
Q  118 tgtaaagttaaataaattcttactgataacaggaatctgaagttgtagggaaacatgttggacaaagtcacaggcatccatgtttg 203  Q
    ||||||||| |||||||||||||| || |||||||| |  |||||||||  ||||  ||||||||||||| | |||||||||||||    
T  7218598 tgtaaagttgaataaattcttactaatgacaggaatgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttg 7218513  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 7317465 - 7317550
Alignment:
Q  118 tgtaaagttaaataaattcttactgataacaggaatctgaagttgtagggaaacatgttggacaaagtcacaggcatccatgtttg 203  Q
    ||||||||| || ||||||||||| || |||||||| |  ||| |||||| ||||||||||||||||||| |  ||||||||||||    
T  7317465 tgtaaagttgaagaaattcttactaatgacaggaattttgagtagtagggtaacatgttggacaaagtcataaacatccatgtttg 7317550  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42617937 - 42617905
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccaaaaaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  42617937 tgcaaggacgaaacacatcattaagccaaaaaa 42617905  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 22081586 - 22081558
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccaa 29  Q
    |||||||||||||||||||||||||||||    
T  22081586 tgcaaggacgaaacacatcattaagccaa 22081558  T

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Target: scaffold0771 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 1235 - 1265
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccaaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  1235 tgcaaggacgaaacacatcattaagccaaaa 1265  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 13949095 - 13949125
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccaaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  13949095 tgcaaggacgaaacacatcattaagccaaaa 13949125  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28226144 - 28226177
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccaaaaaat 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  28226144 tgcaaggacgaaacacatcattaagccaagaaat 28226177  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 222189 - 222221
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccaaaaaa 33  Q
    ||||||||||||||||||||||||||| |||||    
T  222189 tgcaaggacgaaacacatcattaagcctaaaaa 222221  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15229957 - 15229925
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccaaaaaa 33  Q
    ||||||||| |||||||||||||||||||||||    
T  15229957 tgcaaggacaaaacacatcattaagccaaaaaa 15229925  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44664908 - 44664940
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccaaaaaa 33  Q
    ||||||||||||||||||||||||| |||||||    
T  44664908 tgcaaggacgaaacacatcattaagacaaaaaa 44664940  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6517529 - 6517501
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccaa 29  Q
    |||||||||||||||||||||||||||||    
T  6517529 tgcaaggacgaaacacatcattaagccaa 6517501  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7905269 - 7905237
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccaaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  7905269 tgcaaggacgaaacacatcattaagctaaaaaa 7905237  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37929598 - 37929626
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccaa 29  Q
    |||||||||||||||||||||||||||||    
T  37929598 tgcaaggacgaaacacatcattaagccaa 37929626  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 49955373 - 49955345
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccaa 29  Q
    |||||||||||||||||||||||||||||    
T  49955373 tgcaaggacgaaacacatcattaagccaa 49955345  T

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